macrophage elastase / negative regulation of endothelial cell-matrix adhesion via fibronectin / bronchiole development / positive regulation of epithelial cell proliferation involved in wound healing / elastin catabolic process / regulation of defense response to virus by host / positive regulation of type I interferon-mediated signaling pathway / wound healing, spreading of epidermal cells / negative regulation of type I interferon-mediated signaling pathway / lung alveolus development ...macrophage elastase / negative regulation of endothelial cell-matrix adhesion via fibronectin / bronchiole development / positive regulation of epithelial cell proliferation involved in wound healing / elastin catabolic process / regulation of defense response to virus by host / positive regulation of type I interferon-mediated signaling pathway / wound healing, spreading of epidermal cells / negative regulation of type I interferon-mediated signaling pathway / lung alveolus development / response to amyloid-beta / positive regulation of interferon-alpha production / Collagen degradation / collagen catabolic process / extracellular matrix disassembly / core promoter sequence-specific DNA binding / collagen binding / Degradation of the extracellular matrix / extracellular matrix / extracellular matrix organization / cellular response to virus / metalloendopeptidase activity / protein import into nucleus / endopeptidase activity / sequence-specific DNA binding / serine-type endopeptidase activity / calcium ion binding / negative regulation of transcription by RNA polymerase II / positive regulation of transcription by RNA polymerase II / proteolysis / extracellular space / zinc ion binding / extracellular region / nucleus / cytoplasm Similarity search - Function
Resolution: 2→30.56 Å / Cor.coef. Fo:Fc: 0.896 / Cor.coef. Fo:Fc free: 0.841 / SU B: 7.169 / SU ML: 0.189 / Isotropic thermal model: Isotropic with metals anisotropic / Cross valid method: THROUGHOUT / ESU R: 0.278 / ESU R Free: 0.232 / Stereochemistry target values: MAXIMUM LIKELIHOOD / Details: HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.29268
913
9 %
RANDOM
Rwork
0.2271
-
-
-
all
0.23324
9209
-
-
obs
0.23324
9209
98.16 %
-
Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK
Displacement parameters
Biso mean: 13.6 Å2
Baniso -1
Baniso -2
Baniso -3
1-
-0.23 Å2
-0 Å2
-0.77 Å2
2-
-
-0.42 Å2
0 Å2
3-
-
-
0.01 Å2
Refinement step
Cycle: LAST / Resolution: 2→30.56 Å
Protein
Nucleic acid
Ligand
Solvent
Total
Num. atoms
1238
0
24
78
1340
Refine LS restraints
Refine-ID
Type
Dev ideal
Dev ideal target
Number
X-RAY DIFFRACTION
r_bond_refined_d
0.014
0.02
1294
X-RAY DIFFRACTION
r_angle_refined_deg
1.696
1.93
1755
X-RAY DIFFRACTION
r_dihedral_angle_1_deg
7.094
5
157
X-RAY DIFFRACTION
r_dihedral_angle_2_deg
33.296
23.175
63
X-RAY DIFFRACTION
r_dihedral_angle_3_deg
15.034
15
188
X-RAY DIFFRACTION
r_dihedral_angle_4_deg
16.86
15
7
X-RAY DIFFRACTION
r_chiral_restr
0.109
0.2
179
X-RAY DIFFRACTION
r_gen_planes_refined
0.009
0.021
1021
X-RAY DIFFRACTION
r_nbd_refined
0.243
X-RAY DIFFRACTION
r_nbtor_refined
0.319
X-RAY DIFFRACTION
r_xyhbond_nbd_refined
0.226
X-RAY DIFFRACTION
r_symmetry_vdw_refined
0.262
X-RAY DIFFRACTION
r_symmetry_hbond_refined
0.186
X-RAY DIFFRACTION
r_mcbond_it
1.358
X-RAY DIFFRACTION
r_mcangle_it
2.045
X-RAY DIFFRACTION
r_scbond_it
3
X-RAY DIFFRACTION
r_scangle_it
3.976
X-RAY DIFFRACTION
r_metal_ion_refined
0.165
LS refinement shell
Resolution: 2→2.052 Å / Total num. of bins used: 20
Rfactor
Num. reflection
% reflection
Rfree
0.385
43
-
Rwork
0.339
527
-
obs
-
-
78.08 %
+
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