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- PDB-4fxc: TERTIARY STRUCTURE OF [2FE-2S] FERREDOXIN FROM SPIRULINA PLATENSI... -
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Basic information
Entry | Database: PDB / ID: 4fxc | |||||||||
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Title | TERTIARY STRUCTURE OF [2FE-2S] FERREDOXIN FROM SPIRULINA PLATENSIS REFINED AT 2.5 ANGSTROMS RESOLUTION: STRUCTURAL COMPARISONS OF PLANT-TYPE FERREDOXINS AND AN ELECTROSTATIC POTENTIAL ANALYSIS | |||||||||
![]() | FERREDOXIN | |||||||||
![]() | ELECTRON TRANSPORT | |||||||||
Function / homology | ![]() 2 iron, 2 sulfur cluster binding / electron transfer activity / metal ion binding Similarity search - Function | |||||||||
Biological species | ![]() | |||||||||
Method | ![]() | |||||||||
![]() | Fukuyama, K. / Tsukihara, T. | |||||||||
![]() | ![]() Title: Tertiary structure of [2Fe-2S] ferredoxin from Spirulina platensis refined at 2.5 A resolution: structural comparisons of plant-type ferredoxins and an electrostatic potential analysis. Authors: Fukuyama, K. / Ueki, N. / Nakamura, H. / Tsukihara, T. / Matsubara, H. #1: ![]() Title: X-Ray Analysis of a (2Fe-2S) Ferredoxin from Spirulina Platensis. Main Chain Fold and Location of Side Chains at 2.5 Angstroms Resolution Authors: Tsukihara, T. / Fukuyama, K. / Nakamura, M. / Katsube, Y. / Tanaka, N. / Kakudo, M. / Wada, K. / Hase, T. / Matsubara, H. #2: ![]() Title: Structure of S. Platensis (2Fe-2S) Ferredoxin and Evolution of Chloroplast-Type Ferredoxins Authors: Fukuyama, K. / Hase, T. / Matsumoto, S. / Tsukihara, T. / Katsube, Y. / Tanaka, N. / Kakudo, M. / Wada, K. / Matsubara, H. #3: ![]() Title: X-Ray Analysis of Ferredoxin from Spirulina Platensis. II. Chelate Structure of Active Center Authors: Tsukihara, T. / Fukuyama, K. / Tahara, H. / Katsube, Y. / Matsuura, Y. / Tanaka, N. / Kakudo, M. / Wada, K. / Matsubara, H. #5: ![]() Title: Location of the Iron-Sulfur Cluster in Spirulina Platensis Ferredoxin by X-Ray Analysis Authors: Ogawa, K. / Tsukihara, T. / Tahara, H. / Katsube, Y. / Matsu-Ura, Y. / Tanaka, N. / Kakudo, M. / Wada, K. / Matsubara, H. | |||||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 31 KB | Display | ![]() |
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PDB format | ![]() | 20.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 376.3 KB | Display | ![]() |
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Full document | ![]() | 382.1 KB | Display | |
Data in XML | ![]() | 4.1 KB | Display | |
Data in CIF | ![]() | 5.7 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 10506.314 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) ![]() |
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#2: Chemical | ChemComp-FES / |
#3: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.28 Å3/Da / Density % sol: 46.15 % | ||||||||||||||||||||||||||||||
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Crystal grow | *PLUS Temperature: 3 ℃ / pH: 7.5 / Method: microdialysis | ||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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Processing
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Refinement | Resolution: 2.5→8 Å / σ(F): 2
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Refinement step | Cycle: LAST / Resolution: 2.5→8 Å
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Refine LS restraints |
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Refinement | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS Biso mean: 31.3 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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