[English] 日本語
![](img/lk-miru.gif)
- PDB-4f0t: X-Ray Crystal Structure of Phycocyanin from Synechocystis sp. PCC 6803 -
+
Open data
-
Basic information
Entry | Database: PDB / ID: 4f0t | ||||||
---|---|---|---|---|---|---|---|
Title | X-Ray Crystal Structure of Phycocyanin from Synechocystis sp. PCC 6803 | ||||||
![]() |
| ||||||
![]() | PHOTOSYNTHESIS / Component of the phycobilisome / photosynthetic antenna complex | ||||||
Function / homology | ![]() phycobilisome / plasma membrane-derived thylakoid membrane / photosynthesis Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Marx, A. / Adir, N. | ||||||
![]() | ![]() Title: Allophycocyanin and phycocyanin crystal structures reveal facets of phycobilisome assembly. Authors: Marx, A. / Adir, N. | ||||||
History |
|
-
Structure visualization
Structure viewer | Molecule: ![]() ![]() |
---|
-
Downloads & links
-
Download
PDBx/mmCIF format | ![]() | 78 KB | Display | ![]() |
---|---|---|---|---|
PDB format | ![]() | 63.7 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 1.3 MB | Display | ![]() |
---|---|---|---|---|
Full document | ![]() | 1.3 MB | Display | |
Data in XML | ![]() | 19.9 KB | Display | |
Data in CIF | ![]() | 26.8 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
-
Links
-
Assembly
Deposited unit | ![]()
| ||||||||
---|---|---|---|---|---|---|---|---|---|
1 | ![]()
| ||||||||
Unit cell |
|
-
Components
#1: Protein | Mass: 17602.529 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) ![]() ![]() | ||
---|---|---|---|
#2: Protein | Mass: 18156.451 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) ![]() ![]() | ||
#3: Chemical | #4: Water | ChemComp-HOH / | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
---|
-
Sample preparation
Crystal | Density Matthews: 3.79 Å3/Da / Density % sol: 67.51 % |
---|---|
Crystal grow | Temperature: 293 K / Method: vapor diffusion, hanging drop / pH: 8 Details: 6% PEG 4000; 400mM MgSO4; 20mM Tris pH 8, VAPOR DIFFUSION, HANGING DROP, temperature 293K |
-Data collection
Diffraction source | Source: ![]() ![]() ![]() |
---|---|
Detector | Type: ADSC QUANTUM 315r / Detector: CCD |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Relative weight: 1 |
Reflection | Resolution: 2.25→40 Å / Num. all: 25948 / Num. obs: 25948 / % possible obs: 100 % / Redundancy: 7.8 % / Rmerge(I) obs: 0.084 / Net I/σ(I): 25.7 |
Reflection shell | Resolution: 2.25→2.37 Å / Redundancy: 7.6 % / Rmerge(I) obs: 0.31 / Mean I/σ(I) obs: 7.7 / Num. unique all: 3757 / % possible all: 100 |
-
Processing
Software |
| ||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Method to determine structure: ![]()
| ||||||||||||||||||||
Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.4 Å / Solvent model: MASK | ||||||||||||||||||||
Displacement parameters | Biso mean: 31.36 Å2
| ||||||||||||||||||||
Refine analyze |
| ||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.25→40 Å
| ||||||||||||||||||||
LS refinement shell | Resolution: 2.25→2.308 Å / Total num. of bins used: 20
|