PROTEIN FIBRIL / amyloid / out-of-register / fiber-forming / macrocycle
機能・相同性
機能・相同性情報
plus-end-directed organelle transport along microtubule / axonal transport / histone-dependent DNA binding / neurofibrillary tangle assembly / positive regulation of diacylglycerol kinase activity / negative regulation of establishment of protein localization to mitochondrion / neurofibrillary tangle / positive regulation of protein localization to synapse / microtubule lateral binding / tubulin complex ...plus-end-directed organelle transport along microtubule / axonal transport / histone-dependent DNA binding / neurofibrillary tangle assembly / positive regulation of diacylglycerol kinase activity / negative regulation of establishment of protein localization to mitochondrion / neurofibrillary tangle / positive regulation of protein localization to synapse / microtubule lateral binding / tubulin complex / phosphatidylinositol bisphosphate binding / main axon / regulation of long-term synaptic depression / negative regulation of kinase activity / negative regulation of tubulin deacetylation / generation of neurons / regulation of chromosome organization / positive regulation of protein localization / rRNA metabolic process / internal protein amino acid acetylation / regulation of mitochondrial fission / intracellular distribution of mitochondria / axonal transport of mitochondrion / axon development / central nervous system neuron development / regulation of microtubule polymerization / microtubule polymerization / minor groove of adenine-thymine-rich DNA binding / lipoprotein particle binding / dynactin binding / apolipoprotein binding / glial cell projection / negative regulation of mitochondrial membrane potential / protein polymerization / negative regulation of mitochondrial fission / axolemma / Caspase-mediated cleavage of cytoskeletal proteins / regulation of microtubule polymerization or depolymerization / positive regulation of axon extension / regulation of microtubule cytoskeleton organization / Activation of AMPK downstream of NMDARs / supramolecular fiber organization / regulation of cellular response to heat / stress granule assembly / cytoplasmic microtubule organization / regulation of calcium-mediated signaling / axon cytoplasm / positive regulation of microtubule polymerization / somatodendritic compartment / cellular response to brain-derived neurotrophic factor stimulus / synapse assembly / phosphatidylinositol binding / nuclear periphery / cellular response to nerve growth factor stimulus / positive regulation of superoxide anion generation / protein phosphatase 2A binding / regulation of autophagy / astrocyte activation / response to lead ion / synapse organization / microglial cell activation / Hsp90 protein binding / regulation of synaptic plasticity / PKR-mediated signaling / protein homooligomerization / memory / cytoplasmic ribonucleoprotein granule / cellular response to reactive oxygen species / SH3 domain binding / microtubule cytoskeleton organization / activation of cysteine-type endopeptidase activity involved in apoptotic process / neuron projection development / microtubule cytoskeleton / cell-cell signaling / protein-macromolecule adaptor activity / actin binding / single-stranded DNA binding / cellular response to heat / protein-folding chaperone binding / cell body / growth cone / microtubule binding / double-stranded DNA binding / microtubule / amyloid fibril formation / sequence-specific DNA binding / dendritic spine / learning or memory / nuclear speck / neuron projection / membrane raft / axon / negative regulation of gene expression / neuronal cell body / DNA damage response / dendrite / protein kinase binding / enzyme binding / mitochondrion / DNA binding 類似検索 - 分子機能
: / Microtubule associated protein, tubulin-binding repeat / Microtubule-associated protein Tau / Tau and MAP protein, tubulin-binding repeat / Tau and MAP proteins tubulin-binding repeat signature. / Tau and MAP proteins tubulin-binding repeat profile. 類似検索 - ドメイン・相同性
PHOSPHATE ION / Microtubule-associated protein tau 類似検索 - 構成要素
プロトコル: SINGLE WAVELENGTH / 単色(M)・ラウエ(L): M / 散乱光タイプ: x-ray
放射波長
波長: 0.97949 Å / 相対比: 1
反射
解像度: 1.65→19.4 Å / % possible obs: 97.9 % / Observed criterion σ(I): -3 / Biso Wilson estimate: 13.85 Å2 / Rmerge(I) obs: 0.099 / Net I/σ(I): 7.34
反射 シェル
解像度 (Å)
最高解像度 (Å)
Rmerge(I) obs
Mean I/σ(I) obs
Diffraction-ID
% possible all
1.65-1.69
0.575
1.87
1
98.1
1.69-1.74
0.503
2.28
1
99.1
1.74-1.79
0.395
2.96
1
98.5
1.79-1.84
0.366
3.32
1
98.1
1.84-1.91
0.291
4.05
1
98.8
1.91-1.97
0.198
5.38
1
98.3
1.97-2.05
0.18
5.95
1
99
2.05-2.13
0.145
7.06
1
98.8
2.13-2.22
0.141
7.63
1
98.2
2.22-2.33
0.137
7.8
1
98.1
2.33-2.46
0.13
8.05
1
97.4
2.46-2.61
0.116
8.86
1
97.3
2.61-2.79
0.088
10.2
1
97.2
2.79-3.01
0.081
11.59
1
96.9
3.01-3.3
0.062
13.45
1
95.9
3.3-3.69
0.052
15.13
1
97.2
3.69-4.26
0.045
16.32
1
97
4.26-5.22
0.043
17.15
1
97
5.22-7.38
0.039
16.92
1
97.2
7.38
0.036
17.21
1
90.5
-
位相決定
位相決定
手法: 分子置換
Phasing MR
Model details: Phaser MODE: MR_AUTO
最高解像度
最低解像度
Rotation
2 Å
19.4 Å
Translation
2 Å
19.4 Å
-
解析
ソフトウェア
名称
バージョン
分類
NB
XSCALE
データスケーリング
PHASER
2.1.4
位相決定
REFMAC
精密化
PDB_EXTRACT
3.1
データ抽出
BUSTER
2.8.0
精密化
精密化
構造決定の手法: 分子置換 / 解像度: 1.65→19.4 Å / Cor.coef. Fo:Fc: 0.902 / Cor.coef. Fo:Fc free: 0.8589 / Occupancy max: 1 / Occupancy min: 0.5 / SU B: 4.695 / SU ML: 0.078 / SU R Cruickshank DPI: 0.1143 / 交差検証法: THROUGHOUT / σ(F): 0 / ESU R: 0.114 / ESU R Free: 0.125 / 立体化学のターゲット値: MAXIMUM LIKELIHOOD 詳細: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS; U VALUES: RESIDUAL ONLY
Rfactor
反射数
%反射
Selection details
Rfree
0.2547
495
5 %
RANDOM
Rwork
0.2086
-
-
-
obs
0.2108
9897
100 %
-
溶媒の処理
イオンプローブ半径: 0.8 Å / 減衰半径: 0.8 Å / VDWプローブ半径: 1.4 Å / 溶媒モデル: MASK