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- PDB-4cat: THREE-DIMENSIONAL STRUCTURE OF CATALASE FROM PENICILLIUM VITALE A... -
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Basic information
Entry | Database: PDB / ID: 4cat | |||||||||
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Title | THREE-DIMENSIONAL STRUCTURE OF CATALASE FROM PENICILLIUM VITALE AT 2.0 ANGSTROMS RESOLUTION | |||||||||
![]() | CATALASE | |||||||||
![]() | OXIDOREDUCTASE(H2O2(A)) | |||||||||
Function / homology | PROTOPORPHYRIN IX CONTAINING FE![]() | |||||||||
Biological species | ![]() | |||||||||
Method | ![]() | |||||||||
![]() | Vainshtein, B.K. / Melik-Adamyan, W.R. / Barynin, V.V. / Vagin, A.A. / Grebenko, A.I. | |||||||||
![]() | ![]() Title: Three-dimensional structure of catalase from Penicillium vitale at 2.0 A resolution. Authors: Vainshtein, B.K. / Melik-Adamyan, W.R. / Barynin, V.V. / Vagin, A.A. / Grebenko, A.I. / Borisov, V.V. / Bartels, K.S. / Fita, I. / Rossmann, M.G. #1: ![]() Title: Comparison of Beef Liver and Penicillium Vitale Catalases Authors: Melik-Adamyan, W.R. / Barynin, V.V. / Vagin, A.A. / Borisov, V.V. / Vainshtein, B.K. / Fita, I. / Murthy, M.R.N. / Rossmann, M.G. #2: ![]() Title: The Mechanism of Crystallization of Proteins in an Ultracentrifuge (Russian) Authors: Barynin, V.V. / Melik-Adamyan, V.R. #3: ![]() Title: The Mechanism of Crystallization of Proteins in an Ultracentrifuge Authors: Barynin, V.V. / Melik-Adamyan, V.R. #4: ![]() Title: Structure of Penicillium Vitale Catalase (Russian) Authors: Vainshtein, B.K. / Melik-Adamyan, V.R. / Barynin, V.V. / Vagin, A.A. / Grebenko, A.I. #5: ![]() Title: Structure of Catalase of Penicillium Vitale Authors: Vainshtein, B.K. / Melik-Adamyan, W.R. / Barynin, V.V. / Vagin, A.A. / Grebenko, A.I. #6: ![]() Title: Three-Dimensional Structure of the Enzyme Catalase Authors: Vainshtein, B.K. / Melik-Adamyan, W.R. / Barynin, V.V. / Vagin, A.A. / Grebenko, A.I. #7: ![]() Title: X-Ray Diffraction Study of Catalase from Penicillium Vitale at 3.5 Angstroms Resolution (Russian) Authors: Vainshtein, B.K. / Melik-Adamian, V.R. / Barynin, V.V. / Vagin, A.A. #8: ![]() Title: X-Ray Diffraction Investigation of Catalase of Penicillium Vitale with 3.5 Angstroms Resolution Authors: Vainshtein, B.K. / Melik-Adamyan, V.R. / Barynin, V.V. / Vagin, A.A. #9: ![]() Title: X-Ray Study of the Structure of Catalase of Penicillium Vitale Pidopl. Et Bilai with the 6 Angstroms Resolution (Russian) Authors: Vainstein, B.K. / Melik-Adamian, V.R. / Barynin, V.V. / Vagin, A.A. / Nekrasov, Iu.V. / Malinina, I.V. / Gulyi, M.F. / Gudkova, L.V. / Degtiar, R.G. #10: ![]() Title: X-Ray Diffraction Investigation of the Structure of Catalase of the Fungus Penicillium Vitale Pidopl. Et Bilai with a Resolution of 6 Angstroms Authors: Vainshtein, B.K. / Melik-Adamyan, V.R. / Barynin, V.V. / Vagin, A.A. / Nekrasov, Yu.N. / Malinina, L.V. / Gulyi, M.F. / Gudkova, L.V. / Degtyar, R.G. #11: ![]() Title: Crystallization of Catalase in an Ultracentrifuge (Russian) Authors: Karpukhina, S.Ya. / Barynin, V.V. / Lobanova, G.M. #12: ![]() Title: Crystallization of Catalase in the Ultracentrifuge Authors: Karpukhina, S.Ya. / Barynin, V.V. / Lobanova, G.M. | |||||||||
History |
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Remark 700 | SHEET THE NINE-STRANDED BETA-SHEET *B1* PRESENTED ON SHEET RECORDS BELOW IS ACTUALLY AN EIGHT- ...SHEET THE NINE-STRANDED BETA-SHEET *B1* PRESENTED ON SHEET RECORDS BELOW IS ACTUALLY AN EIGHT-STRANDED BETA-BARREL. THIS IS DENOTED BY HAVING THE FIRST STRAND RECUR AS THE LAST. |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 122.4 KB | Display | ![]() |
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PDB format | ![]() | 91.4 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 504.4 KB | Display | ![]() |
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Full document | ![]() | 548.7 KB | Display | |
Data in XML | ![]() | 14.3 KB | Display | |
Data in CIF | ![]() | 25.9 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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Unit cell |
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Atom site foot note | 1: SEE REMARK 5. | ||||||||
Noncrystallographic symmetry (NCS) | NCS oper: (Code: given Matrix: (-0.571766, -0.247241, -0.782224), Vector: Details | PENICILLIUM VITALE CATALASE IS A MOLECULE WITH 222 SYMMETRY. THE ASYMMETRIC UNIT COMPRISES TWO SUBUNITS RELATED BY A NON-CRYSTALLOGRAPHIC TWO-FOLD AXIS. COORDINATES FOR ONE SUBUNIT ARE GIVEN IN THIS ENTRY. APPLYING THE TRANSFORMATION GIVEN ON THE MTRIX RECORDS BELOW WILL GENERATE COORDINATES FOR THE OTHER HALF OF THE ASYMMETRIC UNIT. | |
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Components
#1: Protein | Mass: 56102.242 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() #2: Chemical | Nonpolymer details | THERE IS SOME EVIDENCE THAT THE HEME OF THIS CATALASE IS UNUSUAL AND THE PROTOPORPHYRIN IX ...THERE IS SOME EVIDENCE THAT THE HEME OF THIS CATALASE IS UNUSUAL AND THE PROTOPORPH | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.59 Å3/Da / Density % sol: 65.73 % |
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Processing
Refinement | Highest resolution: 3 Å | ||||||||||||
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Refinement step | Cycle: LAST / Highest resolution: 3 Å
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