[English] 日本語
![](img/lk-miru.gif)
- PDB-4bnb: Nitroreductase CinD from Lactococcus lactis in complex with 4- ni... -
+
Open data
-
Basic information
Entry | Database: PDB / ID: 4bnb | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
Title | Nitroreductase CinD from Lactococcus lactis in complex with 4- nitroquinoline 1-oxide | |||||||||
![]() | COPPER INDUCED NITROREDUCTASE D | |||||||||
![]() | OXIDOREDUCTASE | |||||||||
Function / homology | ![]() cellular response to oxidative stress / oxidoreductase activity / nucleotide binding Similarity search - Function | |||||||||
Biological species | ![]() | |||||||||
Method | ![]() ![]() ![]() | |||||||||
![]() | Waltersperger, S. / Oberholzer, A.E. / Baumgartner, R. | |||||||||
![]() | ![]() Title: Nitroreductase Cind from Lactococcus Lactis in Complex with 2 4-Nitroquinoline 1-Oxidenone Authors: Waltersperger, S. / Oberholzer, A.E. / Baumgartner, R. | |||||||||
History |
|
-
Structure visualization
Structure viewer | Molecule: ![]() ![]() |
---|
-
Downloads & links
-
Download
PDBx/mmCIF format | ![]() | 129.9 KB | Display | ![]() |
---|---|---|---|---|
PDB format | ![]() | 101.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 837.9 KB | Display | ![]() |
---|---|---|---|---|
Full document | ![]() | 840.3 KB | Display | |
Data in XML | ![]() | 12.7 KB | Display | |
Data in CIF | ![]() | 18.6 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 2wqfS S: Starting model for refinement |
---|---|
Similar structure data |
-
Links
-
Assembly
Deposited unit | ![]()
| |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | ![]()
| |||||||||||||||
Unit cell |
| |||||||||||||||
Components on special symmetry positions |
|
-
Components
#1: Protein | Mass: 22431.217 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Details: - FLAVIN MONONUCLEOTIDE COFACTOR - IN COMPLEX WITH 2 4-NITROPHENOL Source: (gene. exp.) ![]() Strain: IL1403 / Production host: ![]() ![]() | ||
---|---|---|---|
#2: Chemical | ChemComp-FMN / | ||
#3: Chemical | #4: Water | ChemComp-HOH / | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
---|
-
Sample preparation
Crystal | Density Matthews: 2.47 Å3/Da / Density % sol: 50.21 % / Description: NONE |
---|
-Data collection
Diffraction | Mean temperature: 100 K |
---|---|
Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS / Detector: PIXEL |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Resolution: 1.48→100 Å / Num. obs: 37568 / % possible obs: 99.2 % / Observed criterion σ(I): 2.9 / Redundancy: 4 % / Rmerge(I) obs: 0.05 / Net I/σ(I): 19 |
Reflection shell | Resolution: 1.48→1.57 Å / Rmerge(I) obs: 0.55 / Mean I/σ(I) obs: 2.9 / % possible all: 99.3 |
-
Processing
Software |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Method to determine structure: ![]() Starting model: PDB ENTRY 2WQF Resolution: 1.478→40.013 Å / SU ML: 0.14 / σ(F): 2 / Phase error: 16.11 / Stereochemistry target values: ML
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 20 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.478→40.013 Å
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
LS refinement shell |
|