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Yorodumi- PDB-3ztr: Hexagonal form P6122 of the Aquifex aeolicus nucleoside diphospha... -
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Open data
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Basic information
| Entry | Database: PDB / ID: 3ztr | ||||||
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| Title | Hexagonal form P6122 of the Aquifex aeolicus nucleoside diphosphate kinase (FIRST STAGE OF RADIATION DAMAGE) | ||||||
Components | NUCLEOSIDE DIPHOSPHATE KINASE | ||||||
Keywords | TRANSFERASE / NUCLEOSIDE DIPHOSPHATE KINASE / DISULFIDE BRIDGE | ||||||
| Function / homology | Function and homology informationpurine nucleotide metabolic process / pyrimidine nucleotide metabolic process / nucleoside-diphosphate kinase / UTP biosynthetic process / CTP biosynthetic process / nucleoside diphosphate kinase activity / GTP biosynthetic process / ATP binding / metal ion binding / cytoplasm Similarity search - Function | ||||||
| Biological species | ![]() AQUIFEX AEOLICUS (bacteria) | ||||||
| Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.3 Å | ||||||
Authors | Boissier, F. / Georgescauld, F. / Moynie, L. / Dupuy, J.-W. / Sarger, C. / Podar, M. / Lascu, I. / Giraud, M.-F. / Dautant, A. | ||||||
Citation | Journal: Proteins / Year: 2012Title: An Inter-Subunit Disulphide Bridge Stabilizes the Tetrameric Nucleoside Diphosphate Kinase of Aquifex Aeolicus Authors: Boissier, F. / Georgescauld, F. / Moynie, L. / Dupuy, J.-W. / Sarger, C. / Podar, M. / Lascu, L. / Giraud, M.-F. / Dautant, A. #1: Journal: Proteins / Year: 2007Title: The Structure of the Escherichia Coli Nucleoside Diphosphate Kinase Reveals a New Quaternary Architecture for This Enzyme Family. Authors: Moynie, L. / Giraud, M. / Georgescauld, F. / Lascu, I. / Dautant, A. #2: Journal: J.Mol.Biol. / Year: 1993Title: Crystal Structure of Myxococcus Xanthus Nucleoside Diphosphate Kinase and its Interaction with a Nucleotide Substrate at 2.0 A Resolution. Authors: Williams, R.L. / Oren, D.A. / Munoz-Dorado, J. / Inouye, S. / Inouye, M. / Arnold, E. | ||||||
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Structure visualization
| Structure viewer | Molecule: Molmil Jmol/JSmol |
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Downloads & links
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Download
| PDBx/mmCIF format | 3ztr.cif.gz | 675.7 KB | Display | PDBx/mmCIF format |
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| PDB format | pdb3ztr.ent.gz | 566.3 KB | Display | PDB format |
| PDBx/mmJSON format | 3ztr.json.gz | Tree view | PDBx/mmJSON format | |
| Others | Other downloads |
-Validation report
| Summary document | 3ztr_validation.pdf.gz | 491.4 KB | Display | wwPDB validaton report |
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| Full document | 3ztr_full_validation.pdf.gz | 505.5 KB | Display | |
| Data in XML | 3ztr_validation.xml.gz | 68.7 KB | Display | |
| Data in CIF | 3ztr_validation.cif.gz | 96.7 KB | Display | |
| Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/zt/3ztr ftp://data.pdbj.org/pub/pdb/validation_reports/zt/3ztr | HTTPS FTP |
-Related structure data
| Related structure data | ![]() 3ztoSC ![]() 3ztpC ![]() 3ztqC ![]() 3ztsC C: citing same article ( S: Starting model for refinement |
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| Similar structure data |
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Assembly
| Deposited unit | ![]()
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| Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
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About Yorodumi




AQUIFEX AEOLICUS (bacteria)
X-RAY DIFFRACTION
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