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- PDB-3x37: Crystal structure of the N-terminal domain of Sld7 in complex wit... -
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Open data
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Basic information
Entry | Database: PDB / ID: 3x37 | ||||||
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Title | Crystal structure of the N-terminal domain of Sld7 in complex with Sld3 | ||||||
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![]() | REPLICATION REGULATOR / Beta-barrel | ||||||
Function / homology | ![]() chromatin => GO:0000785 / DNA replication preinitiation complex / double-strand break repair via break-induced replication / regulation of DNA-templated DNA replication initiation / DNA unwinding involved in DNA replication / chromosome, centromeric region / DNA replication initiation / spindle pole / DNA replication / cell cycle ...chromatin => GO:0000785 / DNA replication preinitiation complex / double-strand break repair via break-induced replication / regulation of DNA-templated DNA replication initiation / DNA unwinding involved in DNA replication / chromosome, centromeric region / DNA replication initiation / spindle pole / DNA replication / cell cycle / chromatin binding / cytoplasm Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Itou, H. / Araki, H. / Shirakihara, Y. | ||||||
![]() | ![]() Title: The quaternary structure of the eukaryotic DNA replication proteins Sld7 and Sld3. Authors: Itou, H. / Shirakihara, Y. / Araki, H. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 61.4 KB | Display | ![]() |
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PDB format | ![]() | 49 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 444.8 KB | Display | ![]() |
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Full document | ![]() | 451.3 KB | Display | |
Data in XML | ![]() | 12.6 KB | Display | |
Data in CIF | ![]() | 16.5 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 14751.167 Da / Num. of mol.: 1 / Fragment: N-terminal domain (UNP RESIDUES 1-115) Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() Strain: ATCC 2623 / CBS 732 / NBRC 1130 / NCYC 568 / NRRL Y-229 Gene: sld3, ZYRO0C14696g / Plasmid: pETduet1 / Production host: ![]() ![]() | ||
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#2: Protein | Mass: 15566.771 Da / Num. of mol.: 1 / Fragment: N-terminal domain (UNP RESIDUES 1-133) Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() Strain: ATCC 2623 / CBS 732 / NBRC 1130 / NCYC 568 / NRRL Y-229 Gene: SLD7, ZYRO0B16016g / Plasmid: pETduet1 / Production host: ![]() ![]() | ||
#3: Chemical | #4: Water | ChemComp-HOH / | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.09 Å3/Da / Density % sol: 60.23 % |
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Crystal grow | Temperature: 293 K / Method: vapor diffusion, hanging drop / pH: 8.8 Details: 0.1M CHES-NaOH, 0.8M Na-Citrate, pH 8.8, VAPOR DIFFUSION, HANGING DROP, temperature 293K |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS 6M / Detector: PIXEL / Date: Dec 11, 2014 |
Radiation | Monochromator: Si (111) / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.97865 Å / Relative weight: 1 |
Reflection | Resolution: 2.35→34.14 Å / Num. all: 15828 / Num. obs: 15781 / % possible obs: 99.7 % / Observed criterion σ(F): 0 / Observed criterion σ(I): 0 / Redundancy: 5 % / Biso Wilson estimate: 41.7 Å2 |
Reflection shell | Resolution: 2.35→2.48 Å / Redundancy: 4.6 % / Mean I/σ(I) obs: 3.3 / Num. unique all: 2252 / % possible all: 99.7 |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | |||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.35→19.98 Å
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Refine LS restraints |
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LS refinement shell | Refine-ID: X-RAY DIFFRACTION / Total num. of bins used: 6 / % reflection obs: 100 %
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