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Open data
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Basic information
Entry | Database: PDB / ID: 3vjz | ||||||
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Title | Crystal structure of the DNA mimic protein DMP19 | ||||||
![]() | Putative uncharacterized protein | ||||||
![]() | GENE REGULATION / helix bundle / DNA mimic | ||||||
Function / homology | A middle domain of Talin 1 - #60 / Domain of unknown function DUF4375 / Domain of unknown function (DUF4375) / A middle domain of Talin 1 / Up-down Bundle / Mainly Alpha / DUF4375 domain-containing protein![]() | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Wang, H.-C. / Ko, T.-P. / Wang, A.H.-J. | ||||||
![]() | ![]() Title: Neisseria conserved protein DMP19 is a DNA mimic protein that prevents DNA binding to a hypothetical nitrogen-response transcription factor Authors: Wang, H.-C. / Ko, T.-P. / Wu, M.-L. / Ku, S.-C. / Wu, H.-J. / Wang, A.H.-J. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 83.8 KB | Display | ![]() |
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PDB format | ![]() | 63.2 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 436.5 KB | Display | ![]() |
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Full document | ![]() | 441.8 KB | Display | |
Data in XML | ![]() | 18.9 KB | Display | |
Data in CIF | ![]() | 28.2 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Components
#1: Protein | Mass: 18666.699 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.24 Å3/Da / Density % sol: 44.98 % |
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Crystal grow | Temperature: 298 K / Method: vapor diffusion, sitting drop / pH: 5.4 Details: 2M Ammonium sulfate, 200mM Potassium sodium tartrate tetrahydrate, 100mM Sodium citrate tribasic dihydrate, pH 5.4, VAPOR DIFFUSION, SITTING DROP, temperature 298K |
-Data collection
Diffraction | Mean temperature: 100 K | |||||||||||||||
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Diffraction source | Source: ![]() | |||||||||||||||
Detector | Type: RIGAKU RAXIS HTC / Detector: IMAGE PLATE / Date: Jan 28, 2010 / Details: mirrors | |||||||||||||||
Radiation | Monochromator: Ni MIRROR + Ni FILTER / Protocol: MAD / Monochromatic (M) / Laue (L): M / Scattering type: x-ray | |||||||||||||||
Radiation wavelength |
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Reflection | Resolution: 1.8→30 Å / Num. all: 30584 / Num. obs: 30584 / % possible obs: 100 % / Observed criterion σ(F): 0 / Observed criterion σ(I): 1 / Redundancy: 9.5 % / Rmerge(I) obs: 0.058 / Net I/σ(I): 47.3 | |||||||||||||||
Reflection shell | Resolution: 1.8→1.86 Å / Redundancy: 9.1 % / Rmerge(I) obs: 0.874 / Mean I/σ(I) obs: 3.1 / Num. unique all: 3027 / % possible all: 100 |
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Processing
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Refinement | Method to determine structure: ![]()
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Refine analyze |
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Refinement step | Cycle: LAST / Resolution: 1.8→30 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 1.8→1.86 Å
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