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- PDB-3u41: Crystal structure of Escherichia coli DmsD in space group P212121 -

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基本情報

登録情報
データベース: PDB / ID: 3u41
タイトルCrystal structure of Escherichia coli DmsD in space group P212121
要素Twin-arginine leader-binding protein dmsD
キーワードCHAPERONE / TorD-like DmsD / Chaperone Translocation TorD-like TAT / preDmsA / Cytosol
機能・相同性
機能・相同性情報


signal sequence binding / : / protein maturation / plasma membrane / cytoplasm
類似検索 - 分子機能
Tat proofreading chaperone DmsD / Tat proofreading chaperone DmsD-type / : / TorD-like / TorD-like / DMSO/Nitrate reductase chaperone / TorD-like superfamily / Nitrate reductase delta subunit / Orthogonal Bundle / Mainly Alpha
類似検索 - ドメイン・相同性
DI(HYDROXYETHYL)ETHER / Tat proofreading chaperone DmsD
類似検索 - 構成要素
生物種Escherichia coli (大腸菌)
手法X線回折 / シンクロトロン / 分子置換 / 解像度: 2.5 Å
データ登録者Stevens, C.M. / Paetzel, M.
履歴
登録2011年10月6日登録サイト: RCSB / 処理サイト: RCSB
改定 1.02013年2月6日Provider: repository / タイプ: Initial release
改定 1.12017年11月8日Group: Refinement description / カテゴリ: software
Item: _software.classification / _software.contact_author ..._software.classification / _software.contact_author / _software.contact_author_email / _software.date / _software.language / _software.location / _software.name / _software.type / _software.version
改定 1.22023年9月13日Group: Data collection / Database references ...Data collection / Database references / Derived calculations / Refinement description
カテゴリ: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model / struct_ref_seq_dif / struct_site
Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _struct_ref_seq_dif.details / _struct_site.pdbx_auth_asym_id / _struct_site.pdbx_auth_comp_id / _struct_site.pdbx_auth_seq_id

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構造の表示

構造ビューア分子:
MolmilJmol/JSmol

ダウンロードとリンク

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集合体

登録構造単位
A: Twin-arginine leader-binding protein dmsD
B: Twin-arginine leader-binding protein dmsD
C: Twin-arginine leader-binding protein dmsD
D: Twin-arginine leader-binding protein dmsD
E: Twin-arginine leader-binding protein dmsD
F: Twin-arginine leader-binding protein dmsD
G: Twin-arginine leader-binding protein dmsD
H: Twin-arginine leader-binding protein dmsD
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)193,58757
ポリマ-189,1668
非ポリマー4,42149
8,251458
1
A: Twin-arginine leader-binding protein dmsD
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)24,2948
ポリマ-23,6461
非ポリマー6497
181
タイプ名称対称操作
identity operation1_555x,y,z1
手法PISA
2
B: Twin-arginine leader-binding protein dmsD
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)24,2287
ポリマ-23,6461
非ポリマー5836
181
タイプ名称対称操作
identity operation1_555x,y,z1
手法PISA
3
C: Twin-arginine leader-binding protein dmsD
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)24,54011
ポリマ-23,6461
非ポリマー89410
181
タイプ名称対称操作
identity operation1_555x,y,z1
手法PISA
4
D: Twin-arginine leader-binding protein dmsD
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)24,58111
ポリマ-23,6461
非ポリマー93510
181
タイプ名称対称操作
identity operation1_555x,y,z1
手法PISA
5
E: Twin-arginine leader-binding protein dmsD
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)24,3839
ポリマ-23,6461
非ポリマー7378
181
タイプ名称対称操作
identity operation1_555x,y,z1
手法PISA
6
F: Twin-arginine leader-binding protein dmsD
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)24,1778
ポリマ-23,6461
非ポリマー5317
181
タイプ名称対称操作
identity operation1_555x,y,z1
手法PISA
7
G: Twin-arginine leader-binding protein dmsD


分子量 (理論値)分子数
合計 (水以外)23,6461
ポリマ-23,6461
非ポリマー00
181
タイプ名称対称操作
identity operation1_555x,y,z1
手法PISA
8
H: Twin-arginine leader-binding protein dmsD
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)23,7382
ポリマ-23,6461
非ポリマー921
181
タイプ名称対称操作
identity operation1_555x,y,z1
手法PISA
単位格子
Length a, b, c (Å)94.275, 96.221, 210.243
Angle α, β, γ (deg.)90.00, 90.00, 90.00
Int Tables number19
Space group name H-MP212121

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要素

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タンパク質 , 1種, 8分子 ABCDEFGH

#1: タンパク質
Twin-arginine leader-binding protein dmsD


分子量: 23645.797 Da / 分子数: 8 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / : K12 / 遺伝子: b1591, dmsD, JW5262, ynfI / プラスミド: pET-15b / 発現宿主: Escherichia coli (大腸菌) / 株 (発現宿主): BL21(DE3) / 参照: UniProt: P69853

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非ポリマー , 6種, 507分子

#2: 化合物...
ChemComp-GOL / GLYCEROL / GLYCERIN / PROPANE-1,2,3-TRIOL / グリセロ-ル


分子量: 92.094 Da / 分子数: 42 / 由来タイプ: 合成 / : C3H8O3
#3: 化合物 ChemComp-SO4 / SULFATE ION / 硫酸ジアニオン


分子量: 96.063 Da / 分子数: 1 / 由来タイプ: 合成 / : SO4
#4: 化合物 ChemComp-TRS / 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL / TRIS BUFFER / トリス(ヒドロキシメチル)メチルアンモニウム


分子量: 122.143 Da / 分子数: 2 / 由来タイプ: 合成 / : C4H12NO3 / コメント: pH緩衝剤*YM
#5: 化合物 ChemComp-CL / CHLORIDE ION / クロリド


分子量: 35.453 Da / 分子数: 3 / 由来タイプ: 合成 / : Cl
#6: 化合物 ChemComp-PEG / DI(HYDROXYETHYL)ETHER / ジエチレングリコ-ル


分子量: 106.120 Da / 分子数: 1 / 由来タイプ: 合成 / : C4H10O3
#7: 水 ChemComp-HOH / water


分子量: 18.015 Da / 分子数: 458 / 由来タイプ: 天然 / : H2O

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実験情報

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実験

実験手法: X線回折 / 使用した結晶の数: 1

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試料調製

結晶マシュー密度: 2.5 Å3/Da / 溶媒含有率: 50.82 %
結晶化温度: 294 K / 手法: 蒸気拡散法, ハンギングドロップ法 / pH: 6.5
詳細: 1.25M Ammonium Sulfate, 11% (v/v) Glycerol, 0.1M Bis-Tris pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 294K

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データ収集

回折平均測定温度: 100 K
放射光源由来: シンクロトロン / サイト: CLSI / ビームライン: 08B1-1 / 波長: 1.105 Å
検出器タイプ: RAYONIX MX300HE / 検出器: CCD / 日付: 2011年5月26日
詳細: DCM with cryo-cooled 1st crystal sagittally bent 2nd crystal followed by vertically focusing mirror.
放射モノクロメーター: double crystal monochromator (DCM)
プロトコル: SINGLE WAVELENGTH / 単色(M)・ラウエ(L): M / 散乱光タイプ: x-ray
放射波長波長: 1.105 Å / 相対比: 1
反射解像度: 2.12→50 Å / Num. obs: 63206 / % possible obs: 98.4 % / Observed criterion σ(F): 2 / Observed criterion σ(I): -3 / 冗長度: 8.6 % / Rmerge(I) obs: 0.109 / Net I/σ(I): 12.4
反射 シェル
解像度 (Å)冗長度 (%)Rmerge(I) obsDiffraction-ID% possible all
2.12-2.25.20.981194.4
2.2-2.287.60.889198.5
2.28-2.398.50.642198.4
2.39-2.518.70.489198.3
2.51-2.678.60.354198.1
2.67-2.888.60.256198.1
2.88-3.178.60.176199.1
3.17-3.6290.115199.8
3.62-4.579.80.087199.6
4.57-5010.50.069199.6

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解析

ソフトウェア
名称バージョン分類NB
DENZOデータ削減
SCALEPACKデータスケーリング
REFMAC精密化
PDB_EXTRACT3.1データ抽出
MxDCデータ収集
HKL-2000データ削減
PHASES位相決定
精密化構造決定の手法: 分子置換
開始モデル: 3EFP(a)
解像度: 2.5→48.6 Å / Cor.coef. Fo:Fc: 0.922 / Cor.coef. Fo:Fc free: 0.892 / Occupancy max: 1 / Occupancy min: 0.38 / SU B: 19.273 / SU ML: 0.246 / SU R Cruickshank DPI: 0.8727 / 交差検証法: THROUGHOUT / ESU R: 1.084 / ESU R Free: 0.338 / 立体化学のターゲット値: MAXIMUM LIKELIHOOD / 詳細: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
Rfactor反射数%反射Selection details
Rfree0.27068 3180 5 %RANDOM
Rwork0.2298 ---
obs0.23189 59979 94.1 %-
all-107698 --
溶媒の処理イオンプローブ半径: 0.8 Å / 減衰半径: 0.8 Å / VDWプローブ半径: 1.2 Å / 溶媒モデル: MASK
原子変位パラメータBiso mean: 49.563 Å2
Baniso -1Baniso -2Baniso -3
1-4.01 Å2-0 Å20 Å2
2---1.38 Å2-0 Å2
3----2.63 Å2
精密化ステップサイクル: LAST / 解像度: 2.5→48.6 Å
タンパク質核酸リガンド溶媒全体
原子数13167 0 282 458 13907
拘束条件
Refine-IDタイプDev idealDev ideal target
X-RAY DIFFRACTIONr_bond_refined_d0.0050.01913887
X-RAY DIFFRACTIONr_bond_other_d0.0010.0212825
X-RAY DIFFRACTIONr_angle_refined_deg0.9031.94618924
X-RAY DIFFRACTIONr_angle_other_deg0.71329442
X-RAY DIFFRACTIONr_dihedral_angle_1_deg4.44251632
X-RAY DIFFRACTIONr_dihedral_angle_2_deg29.67123.754658
X-RAY DIFFRACTIONr_dihedral_angle_3_deg13.168152063
X-RAY DIFFRACTIONr_dihedral_angle_4_deg14.8161578
X-RAY DIFFRACTIONr_chiral_restr0.0480.22021
X-RAY DIFFRACTIONr_gen_planes_refined0.0030.02115524
X-RAY DIFFRACTIONr_gen_planes_other0.0010.023398
X-RAY DIFFRACTIONr_nbd_refined
X-RAY DIFFRACTIONr_nbd_other
X-RAY DIFFRACTIONr_nbtor_refined
X-RAY DIFFRACTIONr_nbtor_other
X-RAY DIFFRACTIONr_xyhbond_nbd_refined
X-RAY DIFFRACTIONr_xyhbond_nbd_other
X-RAY DIFFRACTIONr_metal_ion_refined
X-RAY DIFFRACTIONr_metal_ion_other
X-RAY DIFFRACTIONr_symmetry_vdw_refined
X-RAY DIFFRACTIONr_symmetry_vdw_other
X-RAY DIFFRACTIONr_symmetry_hbond_refined
X-RAY DIFFRACTIONr_symmetry_hbond_other
X-RAY DIFFRACTIONr_symmetry_metal_ion_refined
X-RAY DIFFRACTIONr_symmetry_metal_ion_other
X-RAY DIFFRACTIONr_mcbond_it0.1221.58212
X-RAY DIFFRACTIONr_mcbond_other
X-RAY DIFFRACTIONr_mcangle_it0.236213184
X-RAY DIFFRACTIONr_scbond_it0.36635690
X-RAY DIFFRACTIONr_scangle_it0.6114.55753
X-RAY DIFFRACTIONr_rigid_bond_restr
X-RAY DIFFRACTIONr_sphericity_free
X-RAY DIFFRACTIONr_sphericity_bonded
LS精密化 シェル解像度: 2.498→2.563 Å / Total num. of bins used: 20
Rfactor反射数%反射
Rfree0.358 217 -
Rwork0.288 4406 -
obs--95.05 %
精密化 TLS

手法: refined / Refine-ID: X-RAY DIFFRACTION

IDL112)L122)L132)L222)L232)L332)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T112)T122)T132)T222)T232)T332)Origin x (Å)Origin y (Å)Origin z (Å)
123.44536.03819.27332.9844-3.027725.23090.3861-1.27280.72040.5408-0.23540.1128-1.2849-1.1009-0.15070.4006-0.039-0.04310.3765-0.02850.630325.452535.648150.2705
20.7480.3302-0.78230.60450.90485.11460.0531-0.0171-0.0565-0.1453-0.12090.0693-0.1902-0.13390.06790.2841-0.0437-0.00630.4105-0.01760.572527.507223.912437.7409
34.62720.52561.846615.4399-4.27238.22820.01040.2646-0.22110.2456-0.09670.2233-0.3874-0.13950.08630.3328-0.05810.04760.4414-0.05020.431824.389720.273526.6117
42.0002-0.5935.54413.69162.746416.826-0.1008-0.098-0.04080.02020.14220.1881-0.3838-0.2897-0.04130.3768-0.0120.09620.36370.0380.437424.676434.143631.1463
519.9011-8.53343.97953.6694-1.72370.83270.08470.3731-0.16480.0268-0.08640.0916-0.1165-0.01320.00170.67050.08050.00740.51520.03090.489829.764134.125224.0311
65.9103-1.23773.66040.6831-1.99715.9583-0.15980.2806-0.2409-0.12230.1594-0.03730.1421-0.43380.00040.471-0.11110.0980.4887-0.12340.570136.360516.826121.0143
72.5704-0.41050.0910.44891.5726.63480.03970.3071-0.0135-0.0026-0.0220.04020.04260.1628-0.01780.3132-0.08380.02780.3931-0.01480.512844.516613.861833.337
83.88348.67841.33219.47913.935611.5240.2695-0.0022-0.52820.60360.068-1.1796-0.23370.824-0.33750.1816-0.01530.05510.4210.01550.605651.518518.858843.9967
917.5583-0.4919-6.07225.12433.31227.75470.0018-0.1640.2980.10450.4043-0.596-0.15870.4215-0.40610.2857-0.0369-0.00020.4454-0.00190.403746.46313.748347.5576
109.70733.5934-1.49541.37670.02748.95170.1848-0.0884-0.32190.0789-0.076-0.15120.25410.1977-0.10870.2612-0.01640.06010.3756-0.05940.552738.133417.156354.1702
1117.4756-1.99735.711116.2196-6.563236.37220.0910.1953-0.18870.66060.1369-0.4059-0.07270.8346-0.22790.28170.0010.02150.44240.03550.430933.2517.213558.2109
1224.7335-16.4049-15.287431.504113.449315.1213-0.6668-0.8125-1.53651.4769-0.08780.06691.17911.12290.75460.3324-0.07910.00280.40820.08060.60229.945211.726947.8105
1314.183914.08819.969838.038524.693816.10750.407-0.026-0.88510.123-0.68490.56910.0995-0.410.2780.3452-0.00890.00990.4760.01630.448637.32548.318944.4003
149.7665-3.5205-4.98172.24013.01924.0835-0.1599-0.0443-0.0791-0.00320.07610.07810.00160.08810.08390.3015-0.02020.05550.3885-0.00390.499331.727320.335844.1201
1517.63537.92093.93739.30342.93794.70090.2898-0.599-0.10150.1207-0.23240.07140.29260.0988-0.05750.28890.0040.02340.4099-0.01030.431626.0525.767952.7347
161.2165-0.2208-3.01132.08971.09868.133-0.0397-0.0393-0.120.2527-0.04450.0099-0.2158-0.02570.08420.3237-0.02860.01980.425-0.01260.573138.602826.603548.5098
174.8371-1.37970.60670.48570.748910.2311-0.0010.41190.33020.0055-0.2175-0.0786-0.0773-0.03030.21850.2663-0.12210.07830.51720.01250.567744.124525.985534.889
182.60762.73774.31928.61763.55297.3685-0.12830.3807-0.1215-0.43990.1859-0.4468-0.1980.5535-0.05770.2922-0.06010.09240.5216-0.02770.456139.371424.5625.0347
191.3395-0.22131.67024.9092.810316.7107-0.10680.01040.1945-0.29910.110.1372-0.63060.2668-0.00320.2547-0.06330.03940.37360.02990.539635.009533.947540.6306
2013.6724-6.0834-10.224.50728.454416.14490.1168-0.07950.9320.33430.0744-0.23060.78790.1615-0.19120.2775-0.02610.09030.34010.00270.616349.075626.790646.0723
2110.56622.561910.859613.5841-2.104328.1029-0.16490.54040.4310.3642-0.2957-1.0376-0.74222.05370.46060.2955-0.00890.030.54730.06290.44660.68423.180340.0427
221.57690.818-0.94374.32535.99311.482-0.0770.2774-0.1859-0.27860.395-0.482-0.40550.4546-0.3180.2116-0.0113-0.01960.45840.09260.635553.96283.558134.2563
231.8257-2.99260.31595.0367-1.34616.21570.05080.0915-0.1557-0.0369-0.05630.3318-0.0833-0.14980.00550.25710.03390.01710.46320.01630.572538.7927-2.76129.6308
243.0195-0.96081.80442.680.19675.3673-0.04570.41910.2597-0.2323-0.1292-0.0901-0.54810.22150.17490.292-0.02620.01420.4946-0.02960.474942.04081.562121.2068
253.38712.5091-1.54186.9582-0.874817.22780.37590.65031.05560.02140.2444-0.2241-0.4337-0.2536-0.62040.1672-0.03690.11090.55380.12550.701754.37351.115423.036
2624.33330.75120.670711.026617.680728.36660.78071.42930.6025-0.1491-0.1394-0.4245-0.2421-0.2585-0.64130.40030.00470.08070.62020.12870.487657.5556-4.224118.1058
272.3045-1.07183.285811.2373.41846.9656-0.1684-0.04950.1317-0.62120.0344-0.2133-0.5452-0.08450.1340.3265-0.00550.07830.549-0.00550.378645.9866-6.792714.4649
285.9059-2.5650.88026.3182-10.240618.83850.05080.2144-0.0804-0.0315-0.05090.08270.0856-0.08280.00020.2135-0.05030.02450.4275-0.05450.556134.2354-12.032622.3489
298.9284-0.44952.76381.84511.32685.2777-0.1369-0.193-0.40670.08090.17430.12080.3732-0.1204-0.03740.2235-0.00220.07040.38940.03340.598238.5408-20.151337.04
303.82393.4179-1.27787.9232-0.58120.54130.262-0.44340.29570.4635-0.18780.3453-0.09970.1447-0.07420.20580.02470.03610.4766-0.01630.510440.2982-15.576447.8286
3111.0934-5.669-3.85266.12336.430518.78480.3349-0.492-0.05190.3138-0.11910.4039-0.1146-0.1624-0.21580.2612-0.05730.04580.36910.01410.473943.1913-6.606953.2831
3218.59232.063317.99993.4805-0.275126.8517-0.1199-0.53680.29550.3558-0.18350.5218-0.4153-0.1170.30340.27490.06360.10450.3969-0.05540.472142.0898-0.96149.4503
3319.2803-4.3816-5.96137.05762.18087.04490.57220.95520.1591-0.6494-0.29090.6003-0.7622-0.29-0.28130.29430.02220.01780.39810.03620.489533.8013-8.911643.2607
341.6622.66611.52249.8613.84831.76630.05920.10520.00130.09580.019-0.00730.01810.09-0.07820.2156-0.00160.02850.4552-0.020.529545.1002-2.034839.6194
355.8266-2.10583.734521.2432-8.11774.69110.0145-0.1203-0.12931.2815-0.03120.0503-0.4770.08050.01670.2825-0.0518-0.02750.53610.01240.423353.28320.862746.6263
362.87212.28462.64192.07522.98255.6363-0.06040.0522-0.1114-0.0804-0.04670.0032-0.19110.03750.10720.22750.02630.02050.4646-0.02050.544549.6758-13.936.9687
370.12440.0483-0.64250.8932-0.39525.1029-0.02770.0297-0.144-0.52530.1358-0.26850.43970.108-0.10810.3490.0110.04920.498-0.06310.709245.3364-12.972322.6964
386.91312.03698.65482.3715-0.796617.1669-0.27920.2604-0.0308-0.046-0.028-0.2162-0.44290.55990.30710.19480.06110.02890.5341-0.0760.484157.7332-6.550733.3706
397.46462.5517-6.254817.0355-4.727227.11450.4947-0.6050.14621.4654-0.21570.1219-0.3109-0.2755-0.27910.20140.0296-0.03690.44050.02190.51560.2846-9.692344.2961
4014.64080.04118.46879.14462.87324.5783-0.0231-0.04350.1650.09270.1125-0.169-0.0716-0.0977-0.08930.26810.08040.03690.35580.02160.4949.3598-23.290841.3597
419.3974.61174.34542.33263.326932.43270.5991-0.5134-0.99260.3712-0.2123-0.3661.39950.8047-0.38680.29840.04230.03490.33790.06640.757528.0713-32.813944.5969
427.3928-3.99876.33955.17811.951415.06520.53170.7948-0.18810.0361-0.5250.19041.08110.6335-0.00670.2582-0.020.05890.46820.02060.544426.8286-27.216737.5525
431.34092.22780.13497.1441-2.41132.0586-0.06810.1830.018-0.3162-0.0942-0.35820.14670.33980.16230.19710.02520.07990.4385-0.02570.638519.4824-17.126634.8166
442.70631.4317-0.51415.67462.65166.8865-0.05780.4480.0993-0.08130.1518-0.1230.01640.1087-0.09410.2071-0.00490.00990.43140.01140.540520.0119-12.399127.5098
453.13973.29211.54317.58753.032611.6771-0.07620.276-0.4457-0.07590.0438-0.44350.11270.29140.03240.27780.08230.05810.4317-0.02250.500820.7385-28.969126.6847
4610.28450.6728-5.03060.76370.74824.1237-0.06930.62480.2207-0.14490.2891-0.0112-0.04660.156-0.21970.44950.0721-0.07180.4993-0.06290.522212.2862-24.519521.636
474.79253.07190.497524.00482.941215.10240.32360.61430.2229-1.4966-0.09590.6253-0.0922-0.1168-0.22770.32190.05570.00040.45440.04710.4577.6165-8.546122.4301
480.9193-0.23741.78960.0669-0.43783.6560.03480.0468-0.0413-0.0467-0.00870.0255-0.108-0.0874-0.02620.29330.002600.42630.00280.58085.9368-8.815637.5764
498.98071.54783.99916.78911.66791.9291-0.1709-0.5892-0.01650.1910.16530.1956-0.0262-0.23550.00560.2578-0.03720.08180.42970.050.53397.0667-13.57753.3561
5018.1972-1.72360.8288.25913.75381.8685-0.2167-0.92860.25370.16890.3615-0.1845-0.0050.0216-0.14480.53640.17640.20120.54420.11920.599520.4451-15.036757.2825
512.0144-4.88995.265313.1991-16.425127.5826-0.0545-0.24030.11980.46220.2997-0.1735-0.16130.3671-0.24510.2856-0.01750.01170.413-0.03820.537525.6456-13.742452.4645
522.443-3.7886-0.565120.09510.83493.46320.08220.25530.4352-0.67580.2992-0.4463-0.11710.5287-0.38140.4215-0.02380.05950.4765-0.0420.472517.1084-3.717746.716
5310.53050.81722.68141.8253-3.58078.83850.0544-0.0115-0.17670.13180.14620.0249-0.2696-0.3872-0.20060.26150.02360.0360.4190.05140.595914.7147-13.841844.7828
545.67640.12290.66110.2464-0.82022.9525-0.0401-0.14660.2736-0.02660.0017-0.01910.0920.0250.03840.2283-0.00840.0020.4287-0.01420.567226.3094-20.096545.379
5512.679-0.8355-6.56213.6285-2.69764.1236-0.136-0.2627-0.0740.23210.0343-0.22880.05630.16250.10170.2770.0365-0.00090.4094-0.01720.511520.4361-25.185851.0783
560.401-1.02760.10112.79620.56254.23290.0048-0.0387-0.00050.06260.0487-0.03180.3075-0.1743-0.05350.2313-0.03720.04110.43180.02830.54718.712-22.002943.7247
576.20165.14642.49574.61322.82937.19870.08650.03980.4804-0.17680.02450.5262-0.1561-0.6924-0.1110.24510.0135-0.03820.43780.01940.54823.0517-17.150630.0993
581.6524-1.62191.09021.8273-0.2313.7770.0689-0.0634-0.0251-0.11120.0523-0.0546-0.0816-0.0622-0.12120.2638-0.04270.00950.414-0.03440.541511.5741-23.003931.9988
593.7327-6.63340.451116.3649-7.596616.8401-0.23960.1602-0.70080.1131-0.7867-0.1660.26920.47751.02620.2828-0.02380.04270.38570.04840.825818.3692-32.416843.1179
6013.9935-3.10082.99140.7176-0.95684.129-0.3052-0.36270.24420.11510.0707-0.0795-0.13750.02120.23440.3209-0.04610.01540.3611-0.01520.60176.5877-24.592651.6363
6121.96741.885-3.757121.9723-7.246622.19-0.3453-0.6017-0.11140.72170.67411.33180.6184-1.4625-0.32880.3593-0.01230.03780.45450.02670.4674-6.6996-0.172354.2065
622.29223.4427-1.66926.8111-2.36914.9976-0.28360.3071-0.1433-0.06760.16960.15080.2428-0.06250.1140.22140.0151-0.00940.3806-0.0120.57060.84513.652442.9452
632.88120.37162.15384.57092.29414.6883-0.2360.32940.1544-0.50550.3064-0.1193-0.17710.0501-0.07050.25270.00620.08350.44840.02890.51311.10726.654432.9814
6414.61739.0175-4.3086.33931.290421.8386-1.18220.83240.0335-0.74490.55950.15530.1862-0.46160.62280.42060.0029-0.12130.42470.02660.5218-1.60884.704727.5092
6514.8189-3.9049-0.87088.31350.865110.425-0.79430.3075-0.43290.13850.43010.48710.3862-0.67420.36420.2181-0.0764-0.0060.37280.00080.5584-8.46984.654436.0279
662.51054.3699-0.96917.7685-1.73460.3976-0.29670.33880.2015-0.34640.44840.37430.0682-0.135-0.15170.42320.0985-0.15390.81650.14090.5591-9.867711.629831.8025
6711.38953.9087-2.5412.6776-3.07314.7303-0.44141.32240.7473-0.61840.42060.31370.3016-0.12790.02080.8627-0.0701-0.19240.43650.03110.51584.099516.116224.4363
6818.49878.26734.59525.78046.210313.8637-0.15210.13010.14360.18980.4068-0.450.2379-0.086-0.25470.2750.02210.02110.4378-0.04220.525612.750318.859633.7299
691.60210.67541.86763.00731.15722.2276-0.1446-0.06540.0117-0.35230.12820.0544-0.217-0.05560.01640.24440.02070.04280.4310.01590.586613.41323.106241.809
7019.69885.0468-2.29935.0639-10.229524.96170.3095-0.91710.59960.2853-0.29650.1376-0.47740.4158-0.0130.30030.1208-0.05540.4295-0.07570.72310.164726.307154.1912
713.21642.2282-1.5067.8505-3.45424.00120.0054-0.22730.2010.41820.1421-0.1688-0.2247-0.0769-0.14750.20540.02660.02520.4351-0.02030.542514.532915.555956.8944
720.9916-1.567-4.765115.35350.180427.1807-0.2741-0.14130.07851.14710.281-1.00120.97040.7832-0.00690.26010.0167-0.01190.5152-0.05650.523213.68163.054558.8501
7324.246527.0713-7.562731.8713-6.48464.7073-0.3970.1298-0.9705-0.08180.2639-1.16840.54030.17180.13310.2405-0.0420.03380.4339-0.05780.621.12238.235847.7212
740.23040.8209-0.41677.05690.13071.39790.00820.00410.0062-0.25810.03270.1326-0.15810.0292-0.04090.2425-0.00550.00170.4405-0.00810.5539.83798.107948.5656
757.48380.1026-5.246516.83725.97525.85820.4719-0.27270.03631.165-0.2035-0.65860.12550.0912-0.26840.33730.0186-0.01960.40820.05480.53053.7105-1.281255.7708
761.50141.31950.1641.18190.15290.02420.08390.00660.00390.0868-0.07810.08040.0011-0.0512-0.00590.2410.02330.05170.4434-0.01790.59712.25315.379951.5082
777.7469-0.3471-5.47420.06170.27843.90190.54880.20890.5318-0.2131-0.0970.0202-0.5742-0.1504-0.45180.84120.0634-0.07260.39850.02340.5292.091620.253333.2294
784.9002-1.855-9.539910.7257.735520.2699-0.08730.64861.0047-1.54151.29871.4434-0.4761-0.6212-1.21140.3978-0.119-0.28750.61980.1980.8484-4.175715.39839.6589
793.72273.9477-7.06610.7341-3.304516.186-0.29480.42560.0155-0.32790.08830.50440.3608-0.94740.20660.2608-0.00640.02590.50370.01540.5609-5.922110.647148.1069
805.06832.5267-0.28698.3032-1.28220.9720.0033-0.128-0.2499-0.00840.10620.10.052-0.2591-0.10950.26610.03260.05440.455-0.03340.5113-0.386418.150956.394
817.55924.6691.68493.24831.67345.5474-0.3558-0.8299-0.3169-0.0655-0.338-0.5592-0.10310.93930.69380.2933-0.2036-0.00290.6853-0.16881.103858.72050.3158-5.7671
823.2097-0.1626-3.54752.96936.537917.7276-0.00380.05830.5991-0.32570.19560.2562-0.980.4301-0.19180.5939-0.0010.09290.3734-0.11480.489349.5744-1.8105-13.8867
836.0611-2.98321.15962.28280.51811.6811-0.4924-0.29170.16410.1897-0.01830.2401-0.1798-0.28830.51080.28460.03590.0360.4391-0.03540.536740.4253-7.059-19.4047
8411.87661.8444-4.68025.3880.29054.89770.3177-0.29450.2478-0.5566-0.14550.3249-0.40470.0499-0.17220.40370.081-0.00460.3805-0.03090.425741.5817-0.3671-24.7651
854.34133.60932.05164.59326.102614.40620.15850.00561.112-0.046-0.13880.5932-0.98570.4977-0.01970.4217-0.2615-0.08120.67490.12440.683256.32180.3192-23.7609
8618.14357.0453-3.49318.46793.8195.358-0.34250.21960.0172-0.95990.7021-0.391-0.72380.5874-0.35960.3925-0.1133-0.00290.5104-0.02150.505958.2568-5.4714-28.314
873.4752-0.72674.13130.3765-0.17377.1034-0.03030.21590.2257-0.06820.078-0.1156-0.140.5717-0.04770.3463-0.0606-0.02590.4571-0.01840.513343.7446-9.2137-35.4537
887.41764.8608-2.933.9396-2.60911.80160.2292-0.27440.24780.0247-0.04870.2831-0.0044-0.094-0.18050.2550.0347-0.03970.5275-0.07880.508436.3278-17.4089-25.4701
895.14330.07930.9927.7709-2.662210.2541-0.0458-0.7003-0.99110.12920.60670.01870.43010.1368-0.56090.23410.0534-0.05080.45290.01510.566342.2518-24.339-11.7454
905.23923.94722.882316.04047.30943.60890.1034-0.2903-0.55550.61250.1321-0.26020.28990.005-0.23540.26240.0939-0.00340.52720.07470.439938.063-22.685-5.2991
912.35956.46680.235320.1976.715916.51420.25180.00660.03160.74280.23160.05990.703-0.3123-0.48330.346-0.0486-0.09370.63090.03360.476140.8738-13.54692.8724
920.3528-0.15430.45387.9734-16.640534.79490.48490.01140.2683-0.04620.51070.53450.2632-0.9805-0.99560.80920.04170.14560.4476-0.03550.666340.1822-5.74521.0489
9315.87396.382711.201232.725414.347511.1229-0.33780.530.7691.14110.062-0.44820.13140.31470.27580.3692-0.11410.10270.4825-0.02410.806231.3567-9.7986-7.9583
940.0392-0.13110.09545.0376-0.17030.89040.0205-0.06280.03030.21190.14010.1924-0.05610.2833-0.16060.2964-0.00270.01990.5382-0.06120.462142.5669-8.8988-8.624
951.4598-2.14922.01616.51742.20114.7891-0.4306-0.0204-0.08041.36470.37840.5573-0.32530.15060.05230.3028-0.03120.04440.5717-0.15380.469550.384-3.5932-0.0458
960.5674-1.1969-3.36314.58227.782220.25340.1421-0.1938-0.00490.61510.0606-0.0699-0.59040.9681-0.20270.4928-0.0934-0.07360.5964-0.02450.51650.3145-15.3352-5.5046
971.52810.50562.31571.0973-2.596215.73430.133-0.053-0.36670.0026-0.1314-0.31080.42230.2527-0.00160.2170.0084-0.00820.5207-0.06180.545949.7394-19.9778-20.2381
982.3682-1.88470.52864.8167-1.33275.0536-0.00970.0462-0.2092-0.15610.129-0.0234-0.13540.2525-0.11920.2189-0.0105-0.00660.4825-0.08440.495850.884-12.1312-24.5072
997.9886-2.73536.15522.16273.188627.89390.1552-0.38090.1553-0.35650.0227-0.2144-1.2322-0.6116-0.17790.29-0.0960.02450.6259-0.04270.722659.7885-9.4794-8.3498
1005.00464.70882.014513.11514.64756.57240.3808-0.584-0.54570.4136-0.3132-0.63450.3585-0.2103-0.06760.14560.1027-0.07250.52210.01890.525851.9464-23.6447-6.4184
10120.667422.6634-10.45724.8571-11.4725.2981-0.58370.2174-0.8569-0.68580.1801-0.91990.3791-0.05540.40361.23240.5124-0.12770.6837-0.12450.504327.991-37.0328-13.2177
1024.5731-0.76262.59162.4422-1.83044.2991-0.04010.29150.1595-0.2975-0.1269-0.27120.36190.13460.1670.2201-0.0403-0.00430.4719-0.00490.530125.8499-26.3524-19.9668
1033.1242.11040.89331.74381.003610.9706-0.20280.00290.2632-0.08060.1080.104-0.50610.48950.09480.3373-0.0153-0.1170.3318-0.02030.490822.2426-14.177-26.3764
1044.5953-4.37574.648513.2071-3.01746.65280.07540.49580.2197-0.7356-0.051-0.3820.6230.7289-0.02440.33750.0403-0.08090.46-0.07540.44225.5494-29.2055-31.3492
10513.46634.21937.49711.8764-0.971924.8917-1.3250.4622-1.4905-0.40820.172-0.7376-0.5989-0.4011.1530.58060.01220.07950.4983-0.16570.640919.8313-33.5292-34.6625
1062.9441-3.51876.08784.469-5.939619.85820.14620.29270.2263-0.2405-0.3752-0.28760.14710.0710.22890.347-0.0844-0.04290.4171-0.01240.524117.3435-22.7759-37.8461
1073.52270.9095-9.03745.7243-3.882923.62810.2330.1349-0.0299-0.0129-0.27420.1641-0.6249-0.27750.04130.36870.0255-0.10220.42470.0180.46611.1514-11.0297-30.0662
10810.16031.10483.67380.1540.42291.43020.2542-0.17660.38620.0118-0.1535-0.00530.0329-0.0411-0.10080.82520.1020.06530.6961-0.10930.58763.9207-9.8543-22.0886
1099.3896-2.3427-0.34561.3161-2.649510.2564-0.2111-1.04040.31650.10770.3596-0.0347-0.245-0.3517-0.14850.1724-0.02190.00270.6421-0.18840.57046.1603-19.2789-12.9749
11013.1334-0.9537-4.05020.07170.29511.2556-0.072-0.4195-0.01240.02490.04840.01880.05940.07930.02360.3913-0.0567-0.00310.7293-0.14360.62534.2928-17.6475-5.4225
11120.9928-5.201210.30979.1093-0.82675.4522-0.7713-1.64660.42490.92650.34310.8161-0.174-0.84470.42820.3301-0.05680.13930.5498-0.10340.533816.1419-21.1934-0.1434
11210.66995.1831-4.896126.0411-23.934622.01630.574-0.7410.44660.7593-0.53290.0356-0.62760.4517-0.04120.4685-0.1142-0.03880.5047-0.16880.39423.3605-19.0633-2.9021
11311.883517.33090.761136.64935.03392.24630.26840.2140.6214-1.0118-0.3437-0.054-0.3095-0.02990.07520.27630.01510.14520.7002-0.09580.543716.0073-9.9413-8.3559
11415.9102-2.37523.87420.522-1.15132.9912-0.2172-0.13780.35410.10460.0658-0.0858-0.205-0.0130.15140.29220.0236-0.04260.4536-0.07780.478318.3392-20.7012-13.6765
1158.36650.4493-0.97824.41552.40733.2540.0699-0.3065-0.05960.536-0.2636-0.01470.0896-0.03190.19370.2694-0.0091-0.03780.46050.00950.413829.1081-26.0246-8.5903
11610.2542-2.55941.59244.8564-1.5313.2164-0.3367-0.3640.18390.29140.0365-0.00650.41170.11110.30020.2065-0.0310.01560.5177-0.03490.477916.2205-29.3284-8.9788
1179.7909-2.33580.57580.5578-0.13650.03820.08470.2847-0.0709-0.0107-0.05290.01850.02580.0186-0.03190.1629-0.0163-0.03960.5511-0.06780.64286.5276-24.7676-21.8942
1181.79222.5571-0.90874.8479-2.1111.0236-0.0798-0.13790.27680.18140.03320.2018-0.2101-0.11910.04670.38250.1088-0.12670.64-0.13940.554310.071-20.2711-30.4376
1190.15790.5264-0.702610.2261-8.61917.7856-0.2639-0.0179-0.1155-0.57060.1180.03540.9786-0.04950.14590.5705-0.02950.01160.4873-0.02330.527817.2796-33.1281-20.7638
12019.3615-5.44444.56512.3862-2.17393.0374-0.7083-1.4042-0.13050.40750.6327-0.0404-0.216-0.1990.07550.2395-0.0150.04360.6192-0.11370.49687.2166-31.4357-9.5576
12118.241-11.07463.05946.7348-1.8530.5157-0.10710.17920.82010.0489-0.0497-0.4658-0.05380.05420.15681.0305-0.11760.0480.3487-0.14810.49321.853128.8674-1.6567
1221.3946-0.6911-1.24339.10593.87558.0375-0.28360.3791-0.1201-0.60990.16670.2059-0.3919-0.19370.11690.779-0.0171-0.01540.2781-0.0080.355429.446316.4522-13.65
1230.59511.97232.32136.55237.71169.07890.04680.0473-0.0110.1810.0895-0.09110.18210.1572-0.13620.8942-0.0369-0.11450.33140.04850.501226.978118.1233-22.2838
1248.3321-1.42948.593937.8636-28.765328.684-0.50830.95611.298-0.2226-0.05720.831-0.20610.84740.56550.8364-0.0233-0.04040.58930.04860.596224.002830.0741-20.8193
1252.1264.5958-5.930913.8311-15.721518.7357-0.50240.5048-0.14571.0207-0.1725-0.7391-0.2859-0.55180.67491.6892-0.4742-0.09130.78970.05780.7428.953234.034-14.6173
1262.128-2.62753.953.3505-5.05947.64530.0420.50920.27750.3595-0.5326-0.3149-0.60770.81810.49061.48740.0240.00290.42240.18750.288733.354530.4445-23.2623
12711.6978-2.71831.679125.5545-12.4416.07490.2580.4586-0.05640.6694-0.13780.3607-0.3210.1055-0.12020.85230.00960.02050.75190.04150.491440.460620.6685-31.0267
12820.8651-10.54747.22565.3885-3.2848.8894-0.20450.43190.6430.0767-0.171-0.2413-0.0153-0.2530.37540.7413-0.10630.11710.3299-0.07180.475441.213311.5119-21.254
1293.4881-0.4804-0.21675.85657.57189.88710.2068-0.13560.6637-0.38690.1138-0.3415-0.37990.2498-0.32070.6237-0.04260.18610.3856-0.07330.547446.377212.6235-7.4964
13021.543720.572814.891437.92818.403111.26620.26660.9561-0.06920.3005-0.1313-0.69890.19740.4796-0.13530.6216-0.09310.07920.7526-0.08730.470850.54639.76760.7548
13112.641-2.1067-8.67343.0728-0.54227.4048-0.0603-0.61540.28030.00810.3047-0.01010.01950.2844-0.24440.4267-0.0722-0.01530.4767-0.17620.413737.62469.86235.4676
13217.3227-8.4537-4.220515.198113.749624.89340.3649-0.7211-0.89080.75670.04870.1955-0.5698-0.4567-0.41360.4463-0.07530.0450.4648-0.00910.303527.37799.9088.9461
13330.2155-10.7147-12.96677.4538.36679.4589-0.5818-0.746-1.814-0.6402-0.27150.7772-0.6658-0.15940.85330.6421-0.08450.07140.4377-0.03010.532430.56314.1206-3.9098
1344.2223-0.50810.37960.61460.07242.6730.1220.2961-0.0514-0.33740.0184-0.0087-0.574-0.0289-0.14050.5995-0.00670.03770.2969-0.05260.427531.294113.8298-3.856
13525.52241.87420.789110.72675.95173.30920.5847-1.06160.65140.2933-0.58480.02190.1385-0.35510.00010.71980.0547-0.02460.4732-0.06410.300522.342119.72763.5517
1364.638-5.1023-6.60357.99933.46715.5828-0.048-0.05620.22-0.00990.0047-0.3814-0.007-0.00710.04320.5755-0.07270.00680.3419-0.12350.516835.474821.16252.596
1370.08510.0667-1.1919.31110.371122.49710.09280.06860.0505-0.51310.384-0.61250.6433-0.7008-0.47680.8337-0.11480.14270.47120.01490.393144.679522.3702-14.0988
1386.1189-7.46822.0499.1204-2.233820.6570.58940.12250.0994-0.7554-0.1152-0.11190.11072.3003-0.47421.0107-0.17810.06210.32470.03580.32337.45723.6993-18.1803
1394.24-0.89894.238412.67533.70055.93390.15160.1662-0.12331.1256-0.26840.74830.54710.06430.11680.85-0.06160.11140.34910.04240.597835.236629.6687-8.292
14010.7081-6.210.4996.39011.60321.4163-0.0739-0.60190.5413-0.48680.4063-0.5973-0.56260.1504-0.33230.7941-0.24810.16610.384-0.14490.429639.132725.63852.2463
14134.90944.5479-5.196728.829615.07099.5576-0.0557-1.3791-0.11720.25090.1493-0.17290.16820.3881-0.09360.46580.0903-0.05190.6324-0.05350.6075-7.5264-6.6298-7.657
14223.6766.62272.642614.15836.28462.8325-0.59020.5624-1.3077-0.65790.17390.5799-0.4258-0.10830.41630.65990.518-0.41760.8207-0.370.5260.9643-1.8189-15.3798
1436.29359.3236-8.904523.4728-9.837915.0196-0.72250.76381.0326-1.14881.13410.7584-0.0656-0.811-0.41161.6318-0.0431-0.99650.26270.50131.69213.39815.1244-19.2697
1442.2639-3.359-1.74125.01622.59711.3705-0.24720.1054-0.2550.4456-0.0710.40880.2653-0.09190.31821.072-0.2316-0.20010.45980.07960.80694.7821.6589-27.1361
1450.12411.10711.190610.583611.350412.1994-0.1055-0.01010.0273-0.2832-0.28420.3781-0.3793-0.4360.38970.87530.1049-0.14140.8352-0.05490.7407-7.3261-0.3881-23.0851
14621.46435.3883-7.59721.4836-1.03578.71950.6636-0.5038-1.35260.2804-0.2164-0.46020.3885-0.1385-0.44720.82510.0421-0.10390.5572-0.04160.7091-5.67958.4327-27.971
1474.4084-1.7421-6.72280.69022.663810.38490.2595-0.0107-0.0293-0.06510.0253-0.006-0.35040.3015-0.28491.01440.0932-0.30240.968-0.3141.285711.052914.902-30.221
14813.31375.3940.74857.2793-6.21948.4343-0.23290.1110.5324-0.49570.02830.06140.29460.00150.20461.12540.266-0.01680.243-0.07850.476414.468317.4983-16.2872
1499.4818-8.78662.440916.25850.05817.54490.7947-0.09380.3628-1.1705-0.68740.3495-0.94010.1691-0.10730.56470.2534-0.09710.396-0.16490.397510.394617.4829-0.7637
1503.01654.9768-0.571729.189-8.029711.91330.2784-0.6251-0.40850.8152-0.34620.56010.1178-1.04210.06770.20040.0592-0.03410.6193-0.14020.50558.39713.63655.0589
15112.12328.45145.05287.03975.70746.3303-0.00470.1041-0.7791-0.4155-0.2858-0.2679-0.7668-0.5280.29040.43110.2208-0.03310.3878-0.08640.447513.65593.4302-4.6951
1525.2523.45752.226429.4778-1.3271.2623-0.1789-0.66640.1342-0.895-0.00470.2383-0.0703-0.43810.18360.2710.2455-0.15260.6382-0.35140.65125.2393-3.3695-7.4556
1535.11117.15920.659916.39621.34690.11490.4676-0.6255-0.5611-0.2567-0.50051.0288-0.0033-0.02490.03290.6126-0.0155-0.10910.7431-0.04790.7865-0.916-6.0408-1.1145
1546.01725.5271-5.835713.06259.952135.0814-0.0895-0.09640.95640.1184-0.64911.71790.4297-1.20980.73860.14170.2917-0.15840.7648-0.36190.7332-1.08714.7514-1.1683
1550.0613-0.18960.31459.3693-11.218213.6810.17230.08190.06280.4487-0.06990.3952-0.37590.2299-0.10240.72290.3127-0.07390.4921-0.09780.86180.875515.7851-9.1401
15616.84378.7924-6.09876.287-6.975310.9613-1.4914-0.73641.0028-2.16940.2682-0.06443.6558-0.76131.22321.5089-0.25930.13051.0846-0.08030.83423.870520.514-19.1457
15743.2304-13.7171-15.9628.493819.662557.4306-0.5966-0.37970.6059-0.26330.5967-0.1562-1.28341.5863-0.00010.8553-0.3359-0.50970.7118-0.25010.65453.831913.3304-24.079
15830.82678.8522-29.00923.711-11.867438.2588-0.1281-0.9211-0.26170.0867-0.5953-0.1069-0.49821.66660.72340.48390.1604-0.47020.373-0.11560.9034-4.62698.3739-15.6803
15911.13961.16257.44295.528-1.29875.7710.533-1.1841.1167-0.439-0.62411.80.554-0.62350.09110.47640.1667-0.06840.6335-0.31090.858-9.21853.9192-5.1175
16010.543-8.8297-0.83889.34453.74414.81420.6952-0.1314-0.8721-1.0448-0.03330.2418-0.7998-0.2299-0.66180.56660.3009-0.11510.3928-0.05090.67121.564619.7583-0.8037
精密化 TLSグループ
IDRefine-IDRefine TLS-IDAuth asym-IDAuth seq-ID
1X-RAY DIFFRACTION1A1 - 5
2X-RAY DIFFRACTION2A6 - 25
3X-RAY DIFFRACTION3A26 - 40
4X-RAY DIFFRACTION4A41 - 49
5X-RAY DIFFRACTION5A50 - 61
6X-RAY DIFFRACTION6A62 - 75
7X-RAY DIFFRACTION7A76 - 90
8X-RAY DIFFRACTION8A91 - 95
9X-RAY DIFFRACTION9A96 - 104
10X-RAY DIFFRACTION10A105 - 110
11X-RAY DIFFRACTION11A111 - 115
12X-RAY DIFFRACTION12A116 - 120
13X-RAY DIFFRACTION13A121 - 125
14X-RAY DIFFRACTION14A126 - 139
15X-RAY DIFFRACTION15A140 - 147
16X-RAY DIFFRACTION16A148 - 158
17X-RAY DIFFRACTION17A159 - 166
18X-RAY DIFFRACTION18A167 - 179
19X-RAY DIFFRACTION19A180 - 195
20X-RAY DIFFRACTION20A196 - 204
21X-RAY DIFFRACTION21B1 - 5
22X-RAY DIFFRACTION22B6 - 14
23X-RAY DIFFRACTION23B15 - 28
24X-RAY DIFFRACTION24B29 - 41
25X-RAY DIFFRACTION25B42 - 49
26X-RAY DIFFRACTION26B50 - 55
27X-RAY DIFFRACTION27B56 - 64
28X-RAY DIFFRACTION28B65 - 76
29X-RAY DIFFRACTION29B77 - 96
30X-RAY DIFFRACTION30B97 - 106
31X-RAY DIFFRACTION31B107 - 111
32X-RAY DIFFRACTION32B112 - 119
33X-RAY DIFFRACTION33B120 - 126
34X-RAY DIFFRACTION34B127 - 140
35X-RAY DIFFRACTION35B141 - 149
36X-RAY DIFFRACTION36B150 - 167
37X-RAY DIFFRACTION37B168 - 183
38X-RAY DIFFRACTION38B184 - 192
39X-RAY DIFFRACTION39B193 - 198
40X-RAY DIFFRACTION40B199 - 204
41X-RAY DIFFRACTION41C1 - 5
42X-RAY DIFFRACTION42C6 - 13
43X-RAY DIFFRACTION43C14 - 21
44X-RAY DIFFRACTION44C22 - 40
45X-RAY DIFFRACTION45C41 - 50
46X-RAY DIFFRACTION46C51 - 63
47X-RAY DIFFRACTION47C64 - 70
48X-RAY DIFFRACTION48C71 - 90
49X-RAY DIFFRACTION49C91 - 106
50X-RAY DIFFRACTION50C107 - 111
51X-RAY DIFFRACTION51C112 - 119
52X-RAY DIFFRACTION52C120 - 124
53X-RAY DIFFRACTION53C125 - 129
54X-RAY DIFFRACTION54C130 - 145
55X-RAY DIFFRACTION55C146 - 153
56X-RAY DIFFRACTION56C154 - 165
57X-RAY DIFFRACTION57C166 - 173
58X-RAY DIFFRACTION58C174 - 187
59X-RAY DIFFRACTION59C188 - 194
60X-RAY DIFFRACTION60C195 - 204
61X-RAY DIFFRACTION61D1 - 5
62X-RAY DIFFRACTION62D6 - 21
63X-RAY DIFFRACTION63D22 - 34
64X-RAY DIFFRACTION64D35 - 41
65X-RAY DIFFRACTION65D42 - 50
66X-RAY DIFFRACTION66D51 - 58
67X-RAY DIFFRACTION67D59 - 70
68X-RAY DIFFRACTION68D71 - 78
69X-RAY DIFFRACTION69D79 - 90
70X-RAY DIFFRACTION70D91 - 95
71X-RAY DIFFRACTION71D96 - 110
72X-RAY DIFFRACTION72D111 - 117
73X-RAY DIFFRACTION73D118 - 122
74X-RAY DIFFRACTION74D123 - 139
75X-RAY DIFFRACTION75D140 - 146
76X-RAY DIFFRACTION76D147 - 165
77X-RAY DIFFRACTION77D166 - 178
78X-RAY DIFFRACTION78D179 - 184
79X-RAY DIFFRACTION79D185 - 191
80X-RAY DIFFRACTION80D192 - 204
81X-RAY DIFFRACTION81E1 - 9
82X-RAY DIFFRACTION82E10 - 17
83X-RAY DIFFRACTION83E18 - 25
84X-RAY DIFFRACTION84E26 - 37
85X-RAY DIFFRACTION85E38 - 49
86X-RAY DIFFRACTION86E50 - 60
87X-RAY DIFFRACTION87E61 - 69
88X-RAY DIFFRACTION88E70 - 83
89X-RAY DIFFRACTION89E84 - 95
90X-RAY DIFFRACTION90E96 - 104
91X-RAY DIFFRACTION91E105 - 112
92X-RAY DIFFRACTION92E113 - 117
93X-RAY DIFFRACTION93E118 - 122
94X-RAY DIFFRACTION94E123 - 139
95X-RAY DIFFRACTION95E140 - 149
96X-RAY DIFFRACTION96E150 - 158
97X-RAY DIFFRACTION97E159 - 169
98X-RAY DIFFRACTION98E170 - 186
99X-RAY DIFFRACTION99E187 - 194
100X-RAY DIFFRACTION100E195 - 204
101X-RAY DIFFRACTION101F1 - 5
102X-RAY DIFFRACTION102F6 - 20
103X-RAY DIFFRACTION103F21 - 38
104X-RAY DIFFRACTION104F39 - 49
105X-RAY DIFFRACTION105F50 - 55
106X-RAY DIFFRACTION106F56 - 63
107X-RAY DIFFRACTION107F64 - 76
108X-RAY DIFFRACTION108F77 - 84
109X-RAY DIFFRACTION109F85 - 92
110X-RAY DIFFRACTION110F93 - 103
111X-RAY DIFFRACTION111F104 - 111
112X-RAY DIFFRACTION112F112 - 119
113X-RAY DIFFRACTION113F120 - 125
114X-RAY DIFFRACTION114F126 - 136
115X-RAY DIFFRACTION115F137 - 144
116X-RAY DIFFRACTION116F145 - 159
117X-RAY DIFFRACTION117F160 - 167
118X-RAY DIFFRACTION118F168 - 180
119X-RAY DIFFRACTION119F181 - 192
120X-RAY DIFFRACTION120F193 - 204
121X-RAY DIFFRACTION121G2 - 9
122X-RAY DIFFRACTION122G10 - 27
123X-RAY DIFFRACTION123G28 - 39
124X-RAY DIFFRACTION124G40 - 45
125X-RAY DIFFRACTION125G46 - 52
126X-RAY DIFFRACTION126G53 - 61
127X-RAY DIFFRACTION127G62 - 66
128X-RAY DIFFRACTION128G67 - 79
129X-RAY DIFFRACTION129G80 - 93
130X-RAY DIFFRACTION130G94 - 98
131X-RAY DIFFRACTION131G99 - 110
132X-RAY DIFFRACTION132G111 - 116
133X-RAY DIFFRACTION133G117 - 122
134X-RAY DIFFRACTION134G123 - 139
135X-RAY DIFFRACTION135G140 - 147
136X-RAY DIFFRACTION136G148 - 158
137X-RAY DIFFRACTION137G159 - 173
138X-RAY DIFFRACTION138G174 - 182
139X-RAY DIFFRACTION139G183 - 188
140X-RAY DIFFRACTION140G189 - 204
141X-RAY DIFFRACTION141H2 - 7
142X-RAY DIFFRACTION142H8 - 19
143X-RAY DIFFRACTION143H20 - 28
144X-RAY DIFFRACTION144H29 - 42
145X-RAY DIFFRACTION145H43 - 50
146X-RAY DIFFRACTION146H51 - 61
147X-RAY DIFFRACTION147H62 - 71
148X-RAY DIFFRACTION148H72 - 86
149X-RAY DIFFRACTION149H87 - 101
150X-RAY DIFFRACTION150H102 - 113
151X-RAY DIFFRACTION151H114 - 130
152X-RAY DIFFRACTION152H131 - 141
153X-RAY DIFFRACTION153H142 - 147
154X-RAY DIFFRACTION154H148 - 156
155X-RAY DIFFRACTION155H157 - 165
156X-RAY DIFFRACTION156H166 - 171
157X-RAY DIFFRACTION157H172 - 178
158X-RAY DIFFRACTION158H179 - 187
159X-RAY DIFFRACTION159H188 - 197
160X-RAY DIFFRACTION160H198 - 204

+
万見について

-
お知らせ

-
2022年2月9日: EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

  • EMDBのヘッダファイルのバージョン3が、公式のフォーマットとなりました。
  • これまでは公式だったバージョン1.9は、アーカイブから削除されます。

関連情報:EMDBヘッダ

外部リンク:wwPDBはEMDBデータモデルのバージョン3へ移行します

-
2020年8月12日: 新型コロナ情報

新型コロナ情報

URL: https://pdbj.org/emnavi/covid19.php

新ページ: EM Navigatorに新型コロナウイルスの特設ページを開設しました。

関連情報:Covid-19情報 / 2020年3月5日: 新型コロナウイルスの構造データ

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2020年3月5日: 新型コロナウイルスの構造データ

新型コロナウイルスの構造データ

関連情報:万見生物種 / 2020年8月12日: 新型コロナ情報

外部リンク:COVID-19特集ページ - PDBj / 今月の分子2020年2月:コロナウイルスプロテーアーゼ

+
2019年1月31日: EMDBのIDの桁数の変更

EMDBのIDの桁数の変更

  • EMDBエントリに付与されているアクセスコード(EMDB-ID)は4桁の数字(例、EMD-1234)でしたが、間もなく枯渇します。これまでの4桁のID番号は4桁のまま変更されませんが、4桁の数字を使い切った後に発行されるIDは5桁以上の数字(例、EMD-12345)になります。5桁のIDは2019年の春頃から発行される見通しです。
  • EM Navigator/万見では、接頭語「EMD-」は省略されています。

関連情報:Q: 「EMD」とは何ですか? / 万見/EM NavigatorにおけるID/アクセスコードの表記

外部リンク:EMDB Accession Codes are Changing Soon! / PDBjへお問い合わせ

+
2017年7月12日: PDB大規模アップデート

PDB大規模アップデート

  • 新バージョンのPDBx/mmCIF辞書形式に基づくデータがリリースされました。
  • 今回の更新はバージョン番号が4から5になる大規模なもので、全エントリデータの書き換えが行われる「Remediation」というアップデートに該当します。
  • このバージョンアップで、電子顕微鏡の実験手法に関する多くの項目の書式が改定されました(例:em_softwareなど)。
  • EM NavigatorとYorodumiでも、この改定に基づいた表示内容になります。

外部リンク:wwPDB Remediation / OneDepデータ基準に準拠した、より強化された内容のモデル構造ファイルが、PDBアーカイブで公開されました。

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万見 (Yorodumi)

幾万の構造データを、幾万の視点から

  • 万見(Yorodumi)は、EMDB/PDB/SASBDBなどの構造データを閲覧するためのページです。
  • EM Navigatorの詳細ページの後継、Omokage検索のフロントエンドも兼ねています。

関連情報:EMDB / PDB / SASBDB / 3つのデータバンクの比較 / 万見検索 / 2016年8月31日: 新しいEM Navigatorと万見 / 万見文献 / Jmol/JSmol / 機能・相同性情報 / 新しいEM Navigatorと万見の変更点

他の情報も見る