- PDB-3tnq: Structure and Allostery of the PKA RIIb Tetrameric Holoenzyme -
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Basic information
Entry
Database: PDB / ID: 3tnq
Title
Structure and Allostery of the PKA RIIb Tetrameric Holoenzyme
Components
Protein kinase, cAMP-dependent, catalytic, alpha
cAMP-dependent protein kinase type II-beta regulatory subunit
Keywords
TRANSFERASE / PKA RIIb tetrameric holoenzyme
Function / homology
Function and homology information
circadian sleep/wake cycle, REM sleep / HDL assembly / : / : / Interleukin-3, Interleukin-5 and GM-CSF signaling / CD209 (DC-SIGN) signaling / Rap1 signalling / negative regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning / VEGFA-VEGFR2 Pathway / regulation of cell cycle => GO:0051726 ...circadian sleep/wake cycle, REM sleep / HDL assembly / : / : / Interleukin-3, Interleukin-5 and GM-CSF signaling / CD209 (DC-SIGN) signaling / Rap1 signalling / negative regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning / VEGFA-VEGFR2 Pathway / regulation of cell cycle => GO:0051726 / PKA activation in glucagon signalling / CREB1 phosphorylation through the activation of Adenylate Cyclase / DARPP-32 events / GLI3 is processed to GLI3R by the proteasome / Loss of Nlp from mitotic centrosomes / Recruitment of mitotic centrosome proteins and complexes / Loss of proteins required for interphase microtubule organization from the centrosome / Recruitment of NuMA to mitotic centrosomes / Anchoring of the basal body to the plasma membrane / AURKA Activation by TPX2 / Factors involved in megakaryocyte development and platelet production / MAPK6/MAPK4 signaling / Regulation of PLK1 Activity at G2/M Transition / small GTPase binding => GO:0031267 / Hedgehog 'off' state / PKA activation / response to antipsychotic drug / RET signaling / Regulation of insulin secretion / spontaneous exocytosis of neurotransmitter / negative regulation of meiotic cell cycle / cAMP-dependent protein kinase regulator activity / nucleotide-activated protein kinase complex / Vasopressin regulates renal water homeostasis via Aquaporins / Glucagon-like Peptide-1 (GLP1) regulates insulin secretion / regulation of cellular respiration / regulation of protein processing / regulation of bicellular tight junction assembly / cellular response to parathyroid hormone stimulus / cAMP-dependent protein kinase inhibitor activity / cAMP-dependent protein kinase / regulation of osteoblast differentiation / sperm capacitation / cAMP-dependent protein kinase activity / ciliary base / cAMP-dependent protein kinase complex / AMP-activated protein kinase activity / Ion homeostasis / intercellular bridge / protein kinase A regulatory subunit binding / plasma membrane raft / protein kinase A catalytic subunit binding / axoneme / mesoderm formation / sperm flagellum / regulation of proteasomal protein catabolic process / cAMP binding / regulation of synaptic transmission, glutamatergic / sperm midpiece / protein kinase A signaling / protein serine/threonine/tyrosine kinase activity / positive regulation of protein export from nucleus / acrosomal vesicle / dendritic shaft / fatty acid metabolic process / learning / neural tube closure / cellular response to glucose stimulus / peptidyl-threonine phosphorylation / regulation of protein phosphorylation / modulation of chemical synaptic transmission / neuromuscular junction / mRNA processing / presynapse / cellular response to heat / manganese ion binding / postsynapse / peptidyl-serine phosphorylation / dendritic spine / protein autophosphorylation / protein kinase activity / nuclear speck / neuron projection / protein domain specific binding / protein phosphorylation / protein serine/threonine kinase activity / centrosome / neuronal cell body / glutamatergic synapse / ubiquitin protein ligase binding / dendrite / positive regulation of cell population proliferation / protein-containing complex binding / protein kinase binding / perinuclear region of cytoplasm / Golgi apparatus / magnesium ion binding / protein-containing complex / mitochondrion / nucleoplasm Similarity search - Function
: / cAMP-dependent protein kinase regulatory subunit / cAMP-dependent protein kinase regulatory subunit, dimerization-anchoring domain / Regulatory subunit of type II PKA R-subunit / RIIalpha, Regulatory subunit portion of type II PKA R-subunit / Cyclic nucleotide-binding domain signature 2. / Cyclic nucleotide-binding domain signature 1. / Cyclic nucleotide-binding, conserved site / Cyclic nucleotide-monophosphate binding domain / Cyclic nucleotide-binding domain ...: / cAMP-dependent protein kinase regulatory subunit / cAMP-dependent protein kinase regulatory subunit, dimerization-anchoring domain / Regulatory subunit of type II PKA R-subunit / RIIalpha, Regulatory subunit portion of type II PKA R-subunit / Cyclic nucleotide-binding domain signature 2. / Cyclic nucleotide-binding domain signature 1. / Cyclic nucleotide-binding, conserved site / Cyclic nucleotide-monophosphate binding domain / Cyclic nucleotide-binding domain / cAMP/cGMP binding motif profile. / Cyclic nucleotide-binding domain / Cyclic nucleotide-binding domain superfamily / Extension to Ser/Thr-type protein kinases / Jelly Rolls / AGC-kinase, C-terminal / AGC-kinase C-terminal domain profile. / RmlC-like jelly roll fold / Jelly Rolls / Transferase(Phosphotransferase) domain 1 / Transferase(Phosphotransferase); domain 1 / Phosphorylase Kinase; domain 1 / Phosphorylase Kinase; domain 1 / Serine/threonine-protein kinase, active site / Serine/Threonine protein kinases active-site signature. / Protein kinase domain / Serine/Threonine protein kinases, catalytic domain / Protein kinase, ATP binding site / Protein kinases ATP-binding region signature. / Protein kinase domain profile. / Protein kinase domain / Protein kinase-like domain superfamily / Sandwich / 2-Layer Sandwich / Orthogonal Bundle / Mainly Beta / Mainly Alpha / Alpha Beta Similarity search - Domain/homology
ADENOSINE-5'-DIPHOSPHATE / cAMP-dependent protein kinase catalytic subunit alpha / cAMP-dependent protein kinase catalytic subunit alpha / cAMP-dependent protein kinase type II-beta regulatory subunit Similarity search - Component
Mass: 18.015 Da / Num. of mol.: 13 / Source method: isolated from a natural source / Formula: H2O
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Experimental details
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Experiment
Experiment
Method: X-RAY DIFFRACTION / Number of used crystals: 1
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Sample preparation
Crystal
Density Matthews: 2.91 Å3/Da / Density % sol: 57.73 %
Crystal grow
Temperature: 298 K / Method: vapor diffusion, hanging drop / pH: 7.5 Details: The RII (R230K)2:C2 holoenzyme complex was crystallized at room temperature in 10% PEG8000, 8% ethylene glycol, pH7.5 HEPES buffer by using vapor diffusion at a 1:1 ratio of protein to ...Details: The RII (R230K)2:C2 holoenzyme complex was crystallized at room temperature in 10% PEG8000, 8% ethylene glycol, pH7.5 HEPES buffer by using vapor diffusion at a 1:1 ratio of protein to crystallization solution. VAPOR DIFFUSION, HANGING DROP, temperature 298K
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Data collection
Diffraction
Mean temperature: 200 K
Diffraction source
Source: SYNCHROTRON / Site: ALS / Beamline: 8.2.2 / Wavelength: 1 Å
Detector
Type: ADSC QUANTUM 315 / Detector: CCD
Radiation
Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
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