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Open data
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Basic information
Entry | Database: PDB / ID: 3s6u | ||||||
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Title | Caclcium-bound Ac-ASP-7 | ||||||
![]() | Ac-ASP-7 | ||||||
![]() | UNKNOWN FUNCTION / PR domain / CAP domain / SCP/TAPS | ||||||
Function / homology | Pathogenesis-related Protein p14a / CAP / 3-Layer(aba) Sandwich / Alpha Beta![]() | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Osman, A. / Wang, C.K. / Winter, A. / Loukas, A. / Tribolet, L. / Gasser, R. / Hofmann, A. | ||||||
![]() | ![]() Title: Hookworm SCP/TAPS protein structure--A key to understanding host-parasite interactions and developing new interventions. Authors: Osman, A. / Wang, C.K. / Winter, A. / Loukas, A. / Tribolet, L. / Gasser, R.B. / Hofmann, A. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 83.5 KB | Display | ![]() |
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PDB format | ![]() | 61.8 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 434.4 KB | Display | ![]() |
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Full document | ![]() | 441.8 KB | Display | |
Data in XML | ![]() | 16.1 KB | Display | |
Data in CIF | ![]() | 21.8 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 3s6sSC ![]() 3s6vC S: Starting model for refinement C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 23511.436 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() #2: Chemical | ChemComp-CA / | #3: Water | ChemComp-HOH / | Sequence details | AS PER THE THE AUTHORS THERE IS AN UNEXPLAINED SEQUENCE MISMATCH BETWEEN THE GENBANK SEQUENCE AND ...AS PER THE THE AUTHORS THERE IS AN UNEXPLAINE | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.35 Å3/Da / Density % sol: 47.63 % |
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Crystal grow | Temperature: 289 K / Method: vapor diffusion, hanging drop / pH: 7 Details: 20% MPD, 0.1 M TRIS, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 289K |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC QUANTUM 315 / Detector: CCD / Date: Mar 29, 2011 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.3778 Å / Relative weight: 1 |
Reflection | Resolution: 2.7→61 Å / Num. obs: 23262 / % possible obs: 99.2 % / Redundancy: 14.1 % / Biso Wilson estimate: 54.2 Å2 / Rsym value: 0.063 |
Reflection shell | Resolution: 2.7→2.85 Å / Redundancy: 14.5 % / Mean I/σ(I) obs: 14.9 / Num. unique all: 1777 / Rsym value: 0.169 / % possible all: 98.6 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: PDB entry 3S6S Resolution: 2.7→24.78 Å / SU ML: 0.35 / σ(F): 1.6 / Phase error: 23.23 / Stereochemistry target values: ML
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Solvent computation | Shrinkage radii: 0.83 Å / VDW probe radii: 1.1 Å / Solvent model: FLAT BULK SOLVENT MODEL / Bsol: 34.588 Å2 / ksol: 0.348 e/Å3 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters |
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Refinement step | Cycle: LAST / Resolution: 2.7→24.78 Å
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Refine LS restraints |
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LS refinement shell |
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