Software Name Version Classification ADSCQuantumdata collection MOLREPphasing BUSTER2.9.2refinement XDSdata reduction XSCALEdata scaling
Refinement Method to determine structure : MIRStarting model : PDB ENTRY 3S0FResolution : 1.85→35.1 Å / Cor.coef. Fo :Fc : 0.9239 / Cor.coef. Fo :Fc free : 0.9116 / Occupancy max : 1 / Occupancy min : 1 / Cross valid method : THROUGHOUT / σ(F) : 0 / Stereochemistry target values : Engh & HuberRfactor Num. reflection % reflection Selection details Rfree 0.2278 871 5.06 % RANDOM Rwork 0.2207 - - - all 0.2211 17214 - - obs 0.2211 17214 - -
Displacement parameters Biso max : 76.25 Å2 / Biso mean : 21.47 Å2 / Biso min : 4.96 Å2 Baniso -1 Baniso -2 Baniso -3 1- -1.2807 Å2 0 Å2 0 Å2 2- - -0.9704 Å2 0 Å2 3- - - 2.2511 Å2
Refine analyze Luzzati coordinate error obs : 0.26 ÅRefinement step Cycle : LAST / Resolution : 1.85→35.1 ÅProtein Nucleic acid Ligand Solvent Total Num. atoms 1872 0 0 183 2055
Refine LS restraints Show large table (6 x 17) Hide large table Refine-ID Type Number Restraint function Weight Dev ideal X-RAY DIFFRACTION t_dihedral_angle_d720 SINUSOIDAL2 X-RAY DIFFRACTION t_trig_c_planes68 HARMONIC2 X-RAY DIFFRACTION t_gen_planes250 HARMONIC5 X-RAY DIFFRACTION t_it1892 HARMONIC20 X-RAY DIFFRACTION t_nbdX-RAY DIFFRACTION t_improper_torsionX-RAY DIFFRACTION t_pseud_angleX-RAY DIFFRACTION t_chiral_improper_torsion264 SEMIHARMONIC5 X-RAY DIFFRACTION t_sum_occupanciesX-RAY DIFFRACTION t_utility_distanceX-RAY DIFFRACTION t_utility_angleX-RAY DIFFRACTION t_utility_torsionX-RAY DIFFRACTION t_ideal_dist_contact2587 SEMIHARMONIC4 X-RAY DIFFRACTION t_bond_d1892 HARMONIC2 0.01 X-RAY DIFFRACTION t_angle_deg2546 HARMONIC2 1.37 X-RAY DIFFRACTION t_omega_torsion2.38 X-RAY DIFFRACTION t_other_torsion22.02
LS refinement shell Resolution : 1.85→1.96 Å / Total num. of bins used : 9 Rfactor Num. reflection % reflection Rfree 0.2636 136 4.95 % Rwork 0.2463 2610 - all 0.2471 2746 -
Refinement TLS params. Method : refined / Refine-ID : X-RAY DIFFRACTION
Show large table (25 x 24) Hide large table ID L11 (°2 )L12 (°2 )L13 (°2 )L22 (°2 )L23 (°2 )L33 (°2 )S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T11 (Å2 )T12 (Å2 )T13 (Å2 )T22 (Å2 )T23 (Å2 )T33 (Å2 )Origin x (Å)Origin y (Å)Origin z (Å)1 0 0.0053 0.0098 0.0088 0.0266 0.0009 0.0003 -0.0007 0.0009 0.0003 0.0002 -0.0006 -0.0018 0.0016 -0.0004 -0.002 0.0073 -0.0015 -0.0046 -0.0005 -0.0082 48.2129 31.1048 16.3419 2 0.0108 0.0087 0.0213 0.003 0.0028 0.0004 0.0004 -0.0001 -0.0013 0 0.0003 0.0003 0.0001 -0.0011 -0.0007 -0.0023 0.0017 -0.0047 -0.003 -0.0066 -0.0033 45.8647 18.0647 13.5093 3 0.0003 -0.0193 0.0212 0.0091 0.0185 0.0003 0.0001 0.0011 -0.0012 -0.0016 -0.0002 0.0005 0.0019 -0.0001 0.0001 0.0021 -0.0052 -0.0031 -0.0057 -0.0008 -0.0004 44.4657 10.367 18.7524 4 0.0198 0.0305 0.0487 0.0162 0.0075 0.0549 0.0003 -0.0003 -0.0008 -0.0005 0.0002 0.0001 0.001 0.0007 -0.0004 0.0031 0.0038 -0.0014 -0.0022 0.0011 0.0002 50.5498 11.7703 26.3741 5 0.0032 0.0084 0.0232 0.0196 0.0323 0.0164 -0.0003 -0.0007 -0.0008 -0.0012 0.0007 -0.001 -0.0015 -0.0003 -0.0003 -0.0023 0.0083 -0.0057 -0.0067 -0.0099 0.0015 52.6382 8.8531 17.461 6 0.0002 0.0081 0.0227 0.0173 0.0108 0.008 -0.0001 0.0001 -0.0001 0.0002 -0.0012 0.0007 0.0005 0.0007 0.0013 -0.002 -0.0005 0.0003 0.0008 -0.0028 -0.0044 59.1904 18.8511 12.8542 7 0 -0.027 0.0011 0 0.0177 0 0.0002 0.0009 -0.0026 -0.0004 -0.0001 -0.0019 0.0007 0.0018 -0.0001 -0.0065 -0.003 0.0006 -0.0029 0.0014 -0.0048 65.6402 21.7315 16.3246 8 0 0.0153 0.0122 0.0026 0.0213 0 -0.0001 0 0.0002 -0.0022 -0.0006 0.0001 -0.0003 -0.0001 0.0006 -0.0047 -0.0021 0.0004 -0.0068 -0.0023 -0.0011 59.105 31.4313 23.7378 9 0.0356 0.0109 -0.0317 0.0143 -0.0032 0 0 0.0001 -0.0013 -0.0008 -0.0004 -0.0008 0.0004 -0.0011 0.0004 -0.0051 -0.001 0.0056 0.0023 0.0025 0.0082 65.7902 24.4452 27.1709 10 0.0272 -0.058 -0.0229 0.0508 0.0249 0.0247 -0.0001 0.0012 -0.0009 -0.0005 -0.0009 -0.0001 0.0013 -0.0013 0.001 -0.0007 0.007 -0.0035 0.0003 -0.0055 0.0051 65.0694 9.0547 20.6671 11 0.0418 -0.0135 0.0432 0.0169 -0.0009 0 0.0004 -0.0004 -0.0002 0.0005 -0.0008 -0.0005 0.0003 0.0005 0.0004 -0.0054 0.0015 -0.0084 0.006 -0.0014 -0.0002 58.5346 15.8034 25.6099 12 0.0192 -0.0124 -0.0207 0.0184 -0.025 0.0349 0 0.0008 -0.0006 -0.0007 -0.0013 0.0003 -0.0008 -0.0007 0.0014 -0.0014 0.0019 0.004 0.004 -0.013 0.0019 49.1679 25.7167 26.7609 13 0 -0.0119 0.0106 0.0127 0.0079 0.025 0.0001 0.0011 0.0011 -0.0001 0.0001 -0.0011 -0.0026 0.0015 -0.0002 -0.0009 0.0018 0.0025 0.0005 0.0003 -0.0077 72.7978 53.0028 37.1261 14 0.0001 -0.003 0.0181 0.0054 0.0003 0.0157 0.0002 0.0004 0.0007 0.0003 0.0006 0.0011 -0.0007 0.0003 -0.0008 -0.0011 0.0019 -0.0043 0.0031 -0.0021 -0.0043 70.3371 39.8284 34.5823 15 0 0.0006 -0.0007 0.0062 -0.0255 0.0084 0.0001 0.0026 -0.0021 -0.0011 0.0001 -0.0002 -0.0003 0.0002 -0.0002 0.0024 -0.0026 -0.0059 -0.0079 -0.0046 -0.0052 68.6446 31.9379 40.4122 16 0.0279 0.0262 0.0333 0.0084 0.0001 0.0395 0.0006 -0.0004 -0.001 0.0004 0.0003 -0.0007 -0.0004 0.0003 -0.0009 0.0039 0.0081 -0.0007 -0.0055 -0.0001 0.0005 74.7049 34.0284 47.8603 17 0.0179 0.0216 0.0169 0.0095 -0.0066 0 -0.0004 0.0028 -0.0004 -0.0003 0.0001 0.0001 -0.0002 0.0007 0.0003 0.0002 0.0095 -0.005 -0.0048 -0.0081 -0.0002 76.9567 30.7455 38.9973 18 0.0103 -0.0043 0.0264 0.0003 -0.0187 0.0083 0 0.0002 -0.0008 -0.0001 -0.0004 -0.0007 0.0005 0.0003 0.0004 -0.004 0.008 -0.0044 0.0048 0.0051 -0.0011 83.6119 40.2846 34.0691 19 0 -0.008 0.0054 0 0.0076 0 0.0002 0.0003 -0.0003 0.0002 -0.0001 -0.0003 -0.0001 0.0005 -0.0002 -0.0034 -0.0021 -0.0012 -0.0012 0.0006 -0.0034 90.204 43.2985 37.7095 20 0 0.0308 -0.0058 0.0044 -0.0222 0.0023 0 0.0013 0.0003 -0.0014 -0.0007 0.0001 -0.0007 -0.0001 0.0007 -0.0037 -0.0068 -0.002 -0.0011 -0.001 -0.0039 83.7007 53.6556 44.6823 21 0.0193 -0.0125 -0.0144 0.0107 -0.0071 0 0.0001 0.0005 -0.0016 0 0 -0.0009 0.0003 0.0003 0 -0.0046 -0.0015 0.0037 0.0048 0.0005 0.0029 90.2465 46.412 48.4754 22 0.0087 -0.0029 -0.0104 0.0085 -0.0023 0.0135 0 0.0002 -0.0009 -0.0007 0.0002 -0.0001 0.0008 -0.0008 -0.0002 -0.0015 0.0008 -0.0018 0.001 -0.0018 0.0012 89.294 30.7286 42.3267 23 0 -0.0371 0.0302 0.0028 0.0059 0.0087 0.0003 0.0008 -0.0001 0.0003 0.0002 -0.0002 -0.0001 0.0006 -0.0005 -0.0039 0.0021 -0.0112 0.002 -0.0068 -0.0082 82.8022 37.6974 46.993 24 0.0089 -0.0473 -0.0147 0 -0.0489 0.0482 0.0006 0.002 -0.0014 -0.0013 -0.0012 0.0005 -0.0015 0.0009 0.0007 0.0024 -0.0004 -0.0047 -0.0003 -0.0062 -0.0075 73.7006 47.8392 47.6783
Refinement TLS group Show large table (6 x 24) Hide large table ID Refine-ID Refine TLS-ID Selection details Auth asym-ID Auth seq-ID 1 X-RAY DIFFRACTION 1 {A|1 - A|10} A1 - 10 2 X-RAY DIFFRACTION 2 {A|11 - A|19} A11 - 19 3 X-RAY DIFFRACTION 3 {A|20 - A|29} A20 - 29 4 X-RAY DIFFRACTION 4 {A|30 - A|39} A30 - 39 5 X-RAY DIFFRACTION 5 {A|40 - A|49} A40 - 49 6 X-RAY DIFFRACTION 6 {A|50 - A|59} A50 - 59 7 X-RAY DIFFRACTION 7 {A|60 - A|69} A60 - 69 8 X-RAY DIFFRACTION 8 {A|70 - A|79} A70 - 79 9 X-RAY DIFFRACTION 9 {A|80 - A|89} A80 - 89 10 X-RAY DIFFRACTION 10 {A|90 - A|99} A90 - 99 11 X-RAY DIFFRACTION 11 {A|100 - A|109} A100 - 109 12 X-RAY DIFFRACTION 12 {A|110 - A|119} A110 - 119 13 X-RAY DIFFRACTION 13 {B|1 - B|10} B1 - 10 14 X-RAY DIFFRACTION 14 {B|11 - B|19} B11 - 19 15 X-RAY DIFFRACTION 15 {B|20 - B|29} B20 - 29 16 X-RAY DIFFRACTION 16 {B|30 - B|39} B30 - 39 17 X-RAY DIFFRACTION 17 {B|40 - B|49} B40 - 49 18 X-RAY DIFFRACTION 18 {B|50 - B|59} B50 - 59 19 X-RAY DIFFRACTION 19 {B|60 - B|69} B60 - 69 20 X-RAY DIFFRACTION 20 {B|70 - B|79} B70 - 79 21 X-RAY DIFFRACTION 21 {B|80 - B|89} B80 - 89 22 X-RAY DIFFRACTION 22 {B|90 - B|99} B90 - 99 23 X-RAY DIFFRACTION 23 {B|100 - B|109} B100 - 109 24 X-RAY DIFFRACTION 24 {B|110 - B|119} B110 - 119