- PDB-3rtk: Crystal structure of Cpn60.2 from Mycobacterium tuberculosis at 2.8A -
+
Open data
ID or keywords:
Loading...
-
Basic information
Entry
Database: PDB / ID: 3rtk
Title
Crystal structure of Cpn60.2 from Mycobacterium tuberculosis at 2.8A
Components
60 kDa chaperonin 2
Keywords
CHAPERONE / Heat shock protein / chaperonin
Function / homology
Function and homology information
capsule / adhesion of symbiont to host / GroEL-GroES complex / positive regulation of transcription regulatory region DNA binding / chaperonin ATPase / mitochondrial unfolded protein response / protein import into mitochondrial intermembrane space / host cell mitochondrion / chaperone cofactor-dependent protein refolding / positive regulation of interferon-alpha production ...capsule / adhesion of symbiont to host / GroEL-GroES complex / positive regulation of transcription regulatory region DNA binding / chaperonin ATPase / mitochondrial unfolded protein response / protein import into mitochondrial intermembrane space / host cell mitochondrion / chaperone cofactor-dependent protein refolding / positive regulation of interferon-alpha production / isomerase activity / peptidoglycan-based cell wall / ATP-dependent protein folding chaperone / positive regulation of interleukin-6 production / positive regulation of type II interferon production / unfolded protein binding / positive regulation of T cell activation / protein-folding chaperone binding / response to heat / protein refolding / response to hypoxia / cell surface / ATP hydrolysis activity / extracellular region / ATP binding / plasma membrane / cytoplasm / cytosol Similarity search - Function
In the structure databanks used in Yorodumi, some data are registered as the other names, "COVID-19 virus" and "2019-nCoV". Here are the details of the virus and the list of structure data.
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)
EMDB accession codes are about to change! (news from PDBe EMDB page)
The allocation of 4 digits for EMDB accession codes will soon come to an end. Whilst these codes will remain in use, new EMDB accession codes will include an additional digit and will expand incrementally as the available range of codes is exhausted. The current 4-digit format prefixed with “EMD-” (i.e. EMD-XXXX) will advance to a 5-digit format (i.e. EMD-XXXXX), and so on. It is currently estimated that the 4-digit codes will be depleted around Spring 2019, at which point the 5-digit format will come into force.
The EM Navigator/Yorodumi systems omit the EMD- prefix.
Related info.:Q: What is EMD? / ID/Accession-code notation in Yorodumi/EM Navigator
Yorodumi is a browser for structure data from EMDB, PDB, SASBDB, etc.
This page is also the successor to EM Navigator detail page, and also detail information page/front-end page for Omokage search.
The word "yorodu" (or yorozu) is an old Japanese word meaning "ten thousand". "mi" (miru) is to see.
Related info.:EMDB / PDB / SASBDB / Comparison of 3 databanks / Yorodumi Search / Aug 31, 2016. New EM Navigator & Yorodumi / Yorodumi Papers / Jmol/JSmol / Function and homology information / Changes in new EM Navigator and Yorodumi