Software | Name | Version | Classification |
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CBASS | | data collectionSHELX | | model buildingSHARP | | phasingCNS | 1.1 | refinementHKL-2000 | | data reductionHKL-2000 | | data scalingSHELX | | phasing | | | | | | |
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Refinement | Method to determine structure: SAD / Resolution: 1.91→43.23 Å / Rfactor Rfree error: 0.006 / Data cutoff high absF: 127422.05 / Data cutoff low absF: 0 / Isotropic thermal model: OVERALL / Cross valid method: THROUGHOUT / σ(F): 0 / Stereochemistry target values: Engh & Huber Details: RESOLUTION-DEPENDENT WEIGHTING SCHEME USED, BULK SOLVENT MODEL USED
| Rfactor | Num. reflection | % reflection | Selection details |
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Rfree | 0.254 | 1716 | 4.1 % | RANDOM |
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Rwork | 0.22 | - | - | - |
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all | 0.239 | 42026 | - | - |
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obs | 0.22 | 42026 | 92.6 % | - |
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Solvent computation | Solvent model: FLAT MODEL / Bsol: 36.7848 Å2 / ksol: 0.340373 e/Å3 |
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Displacement parameters | Biso mean: 34.3 Å2
| Baniso -1 | Baniso -2 | Baniso -3 |
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1- | 6.76 Å2 | 0 Å2 | 12.95 Å2 |
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2- | - | -13.07 Å2 | 0 Å2 |
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3- | - | - | 6.31 Å2 |
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Refine analyze | | Free | Obs |
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Luzzati coordinate error | 0.29 Å | 0.26 Å |
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Luzzati d res low | - | 5 Å |
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Luzzati sigma a | 0.31 Å | 0.4 Å |
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Refinement step | Cycle: LAST / Resolution: 1.91→43.23 Å
| Protein | Nucleic acid | Ligand | Solvent | Total |
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Num. atoms | 4308 | 0 | 12 | 91 | 4411 |
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Refine LS restraints | Refine-ID | Type | Dev ideal |
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X-RAY DIFFRACTION | c_bond_d0.006 | X-RAY DIFFRACTION | c_angle_deg1.2 | X-RAY DIFFRACTION | c_dihedral_angle_d22 | X-RAY DIFFRACTION | c_improper_angle_d0.83 | | | | |
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Refine LS restraints NCS | NCS model details: NONE |
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LS refinement shell | Resolution: 1.9→2.02 Å / Rfactor Rfree error: 0.022 / Total num. of bins used: 6
| Rfactor | Num. reflection | % reflection |
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Rfree | 0.32 | 216 | 4.1 % |
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Rwork | 0.344 | 5020 | - |
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obs | - | 5236 | 68.2 % |
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Xplor file | Refine-ID | Serial no | Param file | Topol file |
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X-RAY DIFFRACTION | 1 | protein_rep.paramprotein.topX-RAY DIFFRACTION | 2 | water.paramwater.topX-RAY DIFFRACTION | 3 | ion.paramion.topX-RAY DIFFRACTION | 4 | GOL5-coot-par.txt | GOL5-coot-top.txt | X-RAY DIFFRACTION | 5 | &_1_PARAMETER_INFILE_5&_1_TOPOLOGY_INFILE_5 | | | | | | | |
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