#200 - Aug 2016 Quasisymmetry in Icosahedral Viruses similarity (4)
-
Assembly
Deposited unit
A: Major capsid protein B: Major capsid protein C: Major capsid protein D: Major capsid protein E: Major capsid protein F: Major capsid protein G: Major capsid protein
A: Major capsid protein B: Major capsid protein C: Major capsid protein D: Major capsid protein E: Major capsid protein F: Major capsid protein G: Major capsid protein
A: Major capsid protein B: Major capsid protein C: Major capsid protein D: Major capsid protein E: Major capsid protein F: Major capsid protein G: Major capsid protein
x 5
icosahedral pentamer
1.48 MDa, 35 polymers
Theoretical mass
Number of molelcules
Total (without water)
1,480,026
35
Polymers
1,480,026
35
Non-polymers
0
0
Water
0
Type
Name
Symmetry operation
Number
identity operation
1_555
x,y,z
1
point symmetry operation
4
4
A: Major capsid protein B: Major capsid protein C: Major capsid protein D: Major capsid protein E: Major capsid protein F: Major capsid protein G: Major capsid protein
x 6
icosahedral 23 hexamer
1.78 MDa, 42 polymers
Theoretical mass
Number of molelcules
Total (without water)
1,776,031
42
Polymers
1,776,031
42
Non-polymers
0
0
Water
0
Type
Name
Symmetry operation
Number
identity operation
1_555
x,y,z
1
point symmetry operation
5
5
Idetical with deposited unit
icosahedral asymmetric unit, std point frame
Type
Name
Symmetry operation
Number
identity operation
1_555
x,y,z
1
6
A: Major capsid protein B: Major capsid protein C: Major capsid protein D: Major capsid protein E: Major capsid protein F: Major capsid protein G: Major capsid protein
x 5
crystal asymmetric unit, crystal frame
1.48 MDa, 35 polymers
Theoretical mass
Number of molelcules
Total (without water)
1,480,026
35
Polymers
1,480,026
35
Non-polymers
0
0
Water
0
Type
Name
Symmetry operation
Number
identity operation
1_555
x,y,z
2
point symmetry operation
4
Unit cell
Length a, b, c (Å)
560.120, 560.120, 560.120
Angle α, β, γ (deg.)
90.00, 90.00, 90.00
Int Tables number
197
Space group name H-M
I23
Symmetry
Point symmetry: (Schoenflies symbol: I (icosahedral))
Mass: 42286.453 Da / Num. of mol.: 7 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Enterobacteria phage HK97 (virus) / Gene: 5 / Production host: Escherichia coli (E. coli) / Strain (production host): Bl21(de3) Plys S / References: UniProt: P49861
Sequence details
THE FULL LENGTH PROTEIN WAS CRYSTALLIZED. THERE SHOULD BE A MAIN-CHAIN BREAK BETWEEN A160 AND P170, ...THE FULL LENGTH PROTEIN WAS CRYSTALLIZED. THERE SHOULD BE A MAIN-CHAIN BREAK BETWEEN A160 AND P170, WHERE THE ACTUAL SEQUENCE WAS MODELED AS A SHORTER CONTINUOUS LOOP.
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Experimental details
-
Experiment
Experiment
Method: X-RAY DIFFRACTION / Number of used crystals: 1
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Sample preparation
Crystal
Density Matthews: 4.95 Å3/Da / Density % sol: 75.13 %
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