STATIC LIGHT SCATTERING WITH ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE ASSIGNMENT OF A DIMER AS A SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION.
Mass: 18.015 Da / Num. of mol.: 47 / Source method: isolated from a natural source / Formula: H2O
Sequence details
THIS CONSTRUCT (1-187) WAS EXPRESSED WITH THE PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS ...THIS CONSTRUCT (1-187) WAS EXPRESSED WITH THE PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE.
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Experimental details
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Experiment
Experiment
Method: X-RAY DIFFRACTION / Number of used crystals: 1
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Sample preparation
Crystal
Density Matthews: 2.6 Å3/Da / Density % sol: 52.71 %
Crystal grow
Temperature: 277 K / Method: vapor diffusion, sitting drop / pH: 7.33 Details: 1.80 M lithium sulfate, 0.1M HEPES pH 7.33, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Resolution: 2.35→29.56 Å / Num. all: 19028 / Num. obs: 19028 / % possible obs: 99.9 % / Redundancy: 7.7 % / Biso Wilson estimate: 63.528 Å2 / Rsym value: 0.081 / Net I/σ(I): 13
Reflection shell
Rmerge(I) obs: 0.013 / Diffraction-ID: 1
Resolution (Å)
Redundancy (%)
Mean I/σ(I) obs
Num. measured all
Num. unique all
Rsym value
% possible all
2.35-2.41
7.7
1.6
10667
1392
1.322
99.9
2.41-2.48
7.7
1.9
10572
1380
1.128
100
2.48-2.55
7.7
2.3
10252
1336
0.898
100
2.55-2.63
7.7
3.1
9852
1284
0.669
100
2.63-2.71
7.7
3.9
9631
1253
0.525
100
2.71-2.81
7.7
5
9261
1205
0.383
100
2.81-2.91
7.7
6.9
8894
1160
0.271
100
2.91-3.03
7.7
8.3
8581
1115
0.214
100
3.03-3.17
7.7
11
8515
1107
0.155
100
3.17-3.32
7.7
13.7
7874
1023
0.117
100
3.32-3.5
7.7
17.4
7570
983
0.085
100
3.5-3.72
7.7
21.5
7256
943
0.07
100
3.72-3.97
7.7
25.5
6835
887
0.06
100
3.97-4.29
7.7
27.8
6094
793
0.057
100
4.29-4.7
7.7
31.2
5894
766
0.054
100
4.7-5.25
7.7
30.5
5180
672
0.051
100
5.25-6.07
7.7
29.3
4580
598
0.062
100
6.07-7.43
7.6
30
3917
516
0.069
100
7.43-10.51
7.5
35.4
3021
401
0.049
99.7
10.51-29.56
7.2
36.3
1539
214
0.044
95.2
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Phasing
Phasing
Method: MAD
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Processing
Software
Name
Version
Classification
NB
MolProbity
3beta29
modelbuilding
PDB_EXTRACT
3.1
dataextraction
SHELX
phasing
SHARP
phasing
SCALA
datascaling
REFMAC
5.5.0110
refinement
MOSFLM
datareduction
SHELXD
phasing
autoSHARP
phasing
Refinement
Method to determine structure: MAD / Resolution: 2.35→29.56 Å / Cor.coef. Fo:Fc: 0.951 / Cor.coef. Fo:Fc free: 0.943 / Occupancy max: 1 / Occupancy min: 0.3 / SU B: 18.467 / SU ML: 0.211 / Cross valid method: THROUGHOUT / σ(F): 0 / ESU R: 0.396 / ESU R Free: 0.247 Stereochemistry target values: MAXIMUM LIKELIHOOD WITH PHASES Details: 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE ...Details: 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 4. WATERS WERE EXCLUDED FROM AUTOMATIC TLS ASSIGNMENT. 5. THE MODELING OF MSE B65 IN DUAL CONFORMATION IS SUPPORTED BY THE ANOMALOUS DIFFERENCE FOURIER MAP. 6. RESIDUES 166-168 OF CHAIN A WERE NOT MODELED DUE TO POOR ELECTRON DENSITY IN THIS REGION. 7. ETHYLENE GLYCOL (EDO) AND SULFATE (SO4) FROM THE CRYSTALLIZATION/CRYOPROTECTANT SOLUTIONS HAVE BEEN MODELED INTO THE SOLVENT STRUCTURE. 8. TLS GROUPS WERE ASSIGNED WITH THE AID OF THE TLSMD SERVER.
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.2484
979
5.2 %
RANDOM
Rwork
0.2227
-
-
-
obs
0.224
18989
99.94 %
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Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.4 Å / Solvent model: MASK
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