+Open data
-Basic information
Entry | Database: PDB / ID: 3otp | ||||||
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Title | Crystal structure of the DegP dodecamer with a model substrate | ||||||
Components |
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Keywords | HYDROLASE / typsin-like protease domain PDZ domains / protease | ||||||
Function / homology | Function and homology information peptidase Do / programmed cell death / response to temperature stimulus / protein quality control for misfolded or incompletely synthesized proteins / chaperone-mediated protein folding / serine-type peptidase activity / Lactose synthesis / Antimicrobial peptides / Neutrophil degranulation / beta-N-acetylglucosaminidase activity ...peptidase Do / programmed cell death / response to temperature stimulus / protein quality control for misfolded or incompletely synthesized proteins / chaperone-mediated protein folding / serine-type peptidase activity / Lactose synthesis / Antimicrobial peptides / Neutrophil degranulation / beta-N-acetylglucosaminidase activity / cell wall macromolecule catabolic process / protein folding / lysozyme / lysozyme activity / peptidase activity / response to heat / outer membrane-bounded periplasmic space / defense response to Gram-negative bacterium / killing of cells of another organism / response to oxidative stress / periplasmic space / defense response to Gram-positive bacterium / defense response to bacterium / positive regulation of apoptotic process / serine-type endopeptidase activity / endoplasmic reticulum / proteolysis / extracellular space / identical protein binding / plasma membrane / cytoplasm Similarity search - Function | ||||||
Biological species | Escherichia coli (E. coli) Gallus gallus (chicken) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 3.76 Å | ||||||
Authors | Kim, S. / Grant, R.A. / Sauer, R.T. | ||||||
Citation | Journal: Cell(Cambridge,Mass.) / Year: 2011 Title: Covalent Linkage of Distinct Substrate Degrons Controls Assembly and Disassembly of DegP Proteolytic Cages. Authors: Kim, S. / Grant, R.A. / Sauer, R.T. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 3otp.cif.gz | 430.8 KB | Display | PDBx/mmCIF format |
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PDB format | pdb3otp.ent.gz | 349.9 KB | Display | PDB format |
PDBx/mmJSON format | 3otp.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 3otp_validation.pdf.gz | 521.3 KB | Display | wwPDB validaton report |
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Full document | 3otp_full_validation.pdf.gz | 549.7 KB | Display | |
Data in XML | 3otp_validation.xml.gz | 79 KB | Display | |
Data in CIF | 3otp_validation.cif.gz | 104.9 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/ot/3otp ftp://data.pdbj.org/pub/pdb/validation_reports/ot/3otp | HTTPS FTP |
-Related structure data
-Links
-Assembly
Deposited unit |
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
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