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- PDB-3ob0: A non-self sugar mimic of the HIV glycan shield shows enhanced an... -
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Open data
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Basic information
Entry | Database: PDB / ID: 3ob0 | |||||||||
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Title | A non-self sugar mimic of the HIV glycan shield shows enhanced antigenicity | |||||||||
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![]() | IMMUNE SYSTEM / Fab | |||||||||
Function / homology | Immunoglobulins / Immunoglobulin-like / Sandwich / Mainly Beta![]() | |||||||||
Biological species | ![]() | |||||||||
Method | ![]() ![]() ![]() | |||||||||
![]() | Doores, K.J. / Fulton, Z. / Hong, V. / Patel, M.K. / Scanlan, C.N. / Wormald, M.R. / Finn, M.G. / Burton, D.R. / Wilson, I.A. / Davis, B.G. | |||||||||
![]() | ![]() Title: A nonself sugar mimic of the HIV glycan shield shows enhanced antigenicity. Authors: Doores, K.J. / Fulton, Z. / Hong, V. / Patel, M.K. / Scanlan, C.N. / Wormald, M.R. / Finn, M.G. / Burton, D.R. / Wilson, I.A. / Davis, B.G. | |||||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 175.7 KB | Display | ![]() |
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PDB format | ![]() | 138.7 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 1.2 MB | Display | ![]() |
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Full document | ![]() | 1.2 MB | Display | |
Data in XML | ![]() | 32.4 KB | Display | |
Data in CIF | ![]() | 44.4 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 3oayC ![]() 3oazC ![]() 1op3 C: citing same article ( S: Starting model for refinement |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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2 | ![]()
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Unit cell |
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Components
#1: Antibody | Mass: 23201.840 Da / Num. of mol.: 2 / Fragment: Fab Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() #2: Antibody | Mass: 23845.791 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() #3: Polysaccharide | Source method: isolated from a genetically manipulated source #4: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.64 Å3/Da / Density % sol: 53.46 % |
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-Data collection
Diffraction source | Source: ![]() ![]() ![]() |
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Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Relative weight: 1 |
Reflection | Resolution: 2.85→30 Å / Num. obs: 21555 / Biso Wilson estimate: 59.67 Å2 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: PDB entry 1OP3 ![]() 1op3 Resolution: 2.85→30 Å / Cor.coef. Fo:Fc: 0.8658 / Cor.coef. Fo:Fc free: 0.8403 / Occupancy max: 1 / Occupancy min: 1 / Cross valid method: THROUGHOUT / σ(F): 0
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Displacement parameters | Biso max: 229.74 Å2 / Biso mean: 79.1252 Å2 / Biso min: 36.04 Å2
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Refine analyze | Luzzati coordinate error obs: 0.496 Å | ||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.85→30 Å
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LS refinement shell | Resolution: 2.85→2.99 Å / Total num. of bins used: 11
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