METAL BINDING PROTEIN / E3 ubiquitin ligase / UBR box / Zinc-binding protein / N-end rule / Ligase
Function / homology
Function and homology information
regulation of dipeptide transport / UBR1-RAD6 ubiquitin ligase complex / proteasome regulatory particle binding / stress-induced homeostatically regulated protein degradation pathway / ubiquitin-dependent protein catabolic process via the N-end rule pathway / cytoplasm protein quality control by the ubiquitin-proteasome system / mitochondria-associated ubiquitin-dependent protein catabolic process / proteasome regulatory particle, base subcomplex / ribosome-associated ubiquitin-dependent protein catabolic process / protein monoubiquitination ...regulation of dipeptide transport / UBR1-RAD6 ubiquitin ligase complex / proteasome regulatory particle binding / stress-induced homeostatically regulated protein degradation pathway / ubiquitin-dependent protein catabolic process via the N-end rule pathway / cytoplasm protein quality control by the ubiquitin-proteasome system / mitochondria-associated ubiquitin-dependent protein catabolic process / proteasome regulatory particle, base subcomplex / ribosome-associated ubiquitin-dependent protein catabolic process / protein monoubiquitination / Antigen processing: Ubiquitination & Proteasome degradation / ERAD pathway / ubiquitin ligase complex / RING-type E3 ubiquitin transferase / protein polyubiquitination / ubiquitin-protein transferase activity / ubiquitin protein ligase activity / protein ubiquitination / zinc ion binding / cytoplasm Similarity search - Function
E3 ubiquitin-protein ligase UBR-like, C-terminal / Proteolysis_6 C-terminal / E3 ubiquitin-protein ligase UBR1-like / Putative zinc finger in N-recognin (UBR box) / Zinc finger, UBR-type / Zinc finger UBR-type profile. / Putative zinc finger in N-recognin, a recognition component of the N-end rule pathway Similarity search - Domain/homology
Redundancy: 37.7 % / Av σ(I) over netI: 38.54 / Number: 129124 / Rmerge(I) obs: 0.083 / Χ2: 1.8 / D res high: 2.88 Å / D res low: 50 Å / Num. obs: 3424 / % possible obs: 97.2
Diffraction reflection shell
Highest resolution (Å)
Lowest resolution (Å)
% possible obs (%)
ID
Rmerge(I) obs
Chi squared
Redundancy
6.2
50
96.4
1
0.059
3.713
30.3
4.92
6.2
100
1
0.07
2.808
37.2
4.3
4.92
100
1
0.063
2.297
38.4
3.91
4.3
100
1
0.08
1.858
39.5
3.63
3.91
100
1
0.09
1.584
40
3.41
3.63
100
1
0.13
1.306
42
3.24
3.41
100
1
0.175
1.197
41.1
3.1
3.24
100
1
0.25
1.072
41
2.98
3.1
99.4
1
0.334
0.968
38.1
2.88
2.98
75.2
1
0.474
0.805
29.3
Reflection
Resolution: 2.52→50 Å / Num. obs: 4701 / % possible obs: 94.2 % / Redundancy: 17.3 % / Rmerge(I) obs: 0.091 / Χ2: 1.404 / Net I/σ(I): 9.3
Reflection shell
Resolution (Å)
Redundancy (%)
Rmerge(I) obs
Num. unique all
Χ2
% possible all
2.52-2.61
6.4
0.711
264
0.74
54.2
2.61-2.71
9.1
0.65
404
0.933
89.6
2.71-2.84
13.1
0.573
481
0.846
99.2
2.84-2.99
19.2
0.51
466
0.843
100
2.99-3.17
20.8
0.281
467
0.926
100
3.17-3.42
20.9
0.184
492
1.029
100
3.42-3.76
21
0.112
492
1.228
100
3.76-4.31
20.1
0.076
511
1.501
100
4.31-5.43
19.4
0.064
518
2.067
100
5.43-50
16.2
0.058
606
2.824
97.3
-
Processing
Software
Name
Version
Classification
NB
DENZO
datareduction
SCALEPACK
datascaling
REFMAC
5.2.0019
refinement
PDB_EXTRACT
3.1
dataextraction
HKL-2000
datacollection
HKL-2000
datareduction
HKL-2000
datascaling
SOLVE
phasing
Refinement
Method to determine structure: MAD / Resolution: 2.6→31.84 Å / Cor.coef. Fo:Fc: 0.937 / Cor.coef. Fo:Fc free: 0.891 / Occupancy max: 1 / Occupancy min: 0.5 / SU B: 18.065 / SU ML: 0.208 / Cross valid method: THROUGHOUT / σ(F): 0 / ESU R Free: 0.311 / Stereochemistry target values: MAXIMUM LIKELIHOOD / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.2841
199
4.5 %
RANDOM
Rwork
0.2439
-
-
-
obs
0.2457
4194
98.45 %
-
Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK
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