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Yorodumi- PDB-3ndr: Crystal structure of tetrameric pyridoxal 4-dehydrogenase from Me... -
+Open data
-Basic information
Entry | Database: PDB / ID: 3ndr | ||||||
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Title | Crystal structure of tetrameric pyridoxal 4-dehydrogenase from Mesorhizobium loti | ||||||
Components | 3-oxoacyl-(Acyl-carrier protein) reductase | ||||||
Keywords | OXIDOREDUCTASE / PYRIDOXAL / tPLDH / 4-PYRIDOXOLACTONE / SHORT CHAIN DEHYDROGENASE/REDUCTASE | ||||||
Function / homology | Function and homology information pyridoxal 4-dehydrogenase / pyridoxal 4-dehydrogenase activity / vitamin B6 catabolic process Similarity search - Function | ||||||
Biological species | Mesorhizobium loti (bacteria) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.88 Å | ||||||
Authors | Chu, H.N. | ||||||
Citation | Journal: To be Published Title: Crystal structure of tetrameric pyridoxal 4-dehydrogenase from Mesorhizobium loti Authors: Chu, H.N. / Kobayashi, J. / Yoshikane, Y. / Mikami, B. / Yagi, T. #1: Journal: Acta Crystallogr.,Sect.F / Year: 2010 Title: Crystallization and preliminary X-ray analysis of SDR-type pyridoxal dehydrogenase from Mesorhizobium loti Authors: Chu, H.N. / Kobayashi, J. / Yoshikane, Y. / Mikami, B. / Yagi, T. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 3ndr.cif.gz | 189.4 KB | Display | PDBx/mmCIF format |
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PDB format | pdb3ndr.ent.gz | 152.7 KB | Display | PDB format |
PDBx/mmJSON format | 3ndr.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 3ndr_validation.pdf.gz | 1.6 MB | Display | wwPDB validaton report |
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Full document | 3ndr_full_validation.pdf.gz | 1.6 MB | Display | |
Data in XML | 3ndr_validation.xml.gz | 39.4 KB | Display | |
Data in CIF | 3ndr_validation.cif.gz | 51.8 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/nd/3ndr ftp://data.pdbj.org/pub/pdb/validation_reports/nd/3ndr | HTTPS FTP |
-Related structure data
Related structure data | 2ew8S S: Starting model for refinement |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments: Ens-ID: 1
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