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Yorodumi- PDB-3m9d: Crystal structure of the prokaryotic ubiquintin-like protein Pup ... -
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Open data
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Basic information
| Entry | Database: PDB / ID: 3m9d | ||||||
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| Title | Crystal structure of the prokaryotic ubiquintin-like protein Pup complexed with the hexameric proteasomal ATPase Mpa which includes the amino terminal coiled coil domain and the inter domain | ||||||
Components |
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Keywords | CHAPERONE / alpha helix coil coil / 5 beta-strand barrel / ATP-binding / Nucleotide-binding / Proteasome / S-nitrosylation / Virulence / Isopeptide bond / Ubl conjugation pathway | ||||||
| Function / homology | Function and homology informationubiquitin-like protein reader activity / symbiont defense to host-produced reactive oxygen species / protein pupylation / proteasome-activating nucleotidase complex / response to nitrosative stress / symbiont-mediated perturbation of host defenses / cell wall / proteasomal ubiquitin-independent protein catabolic process / ATP-dependent peptidase activity / proteasome binding ...ubiquitin-like protein reader activity / symbiont defense to host-produced reactive oxygen species / protein pupylation / proteasome-activating nucleotidase complex / response to nitrosative stress / symbiont-mediated perturbation of host defenses / cell wall / proteasomal ubiquitin-independent protein catabolic process / ATP-dependent peptidase activity / proteasome binding / protein unfolding / proteasomal protein catabolic process / cellular response to nitric oxide / peptidoglycan-based cell wall / modification-dependent protein catabolic process / protein tag activity / molecular adaptor activity / ATP hydrolysis activity / ATP binding / identical protein binding / plasma membrane Similarity search - Function | ||||||
| Biological species | ![]() | ||||||
| Method | X-RAY DIFFRACTION / SYNCHROTRON / Resolution: 4.5 Å | ||||||
Authors | Li, H. / Wang, T. | ||||||
Citation | Journal: Nat.Struct.Mol.Biol. / Year: 2010Title: Binding-induced folding of prokaryotic ubiquitin-like protein on the Mycobacterium proteasomal ATPase targets substrates for degradation. Authors: Wang, T. / Darwin, K.H. / Li, H. | ||||||
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Structure visualization
| Structure viewer | Molecule: Molmil Jmol/JSmol |
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Downloads & links
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Download
| PDBx/mmCIF format | 3m9d.cif.gz | 937.2 KB | Display | PDBx/mmCIF format |
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| PDB format | pdb3m9d.ent.gz | 792 KB | Display | PDB format |
| PDBx/mmJSON format | 3m9d.json.gz | Tree view | PDBx/mmJSON format | |
| Others | Other downloads |
-Validation report
| Summary document | 3m9d_validation.pdf.gz | 621.9 KB | Display | wwPDB validaton report |
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| Full document | 3m9d_full_validation.pdf.gz | 754.2 KB | Display | |
| Data in XML | 3m9d_validation.xml.gz | 94.6 KB | Display | |
| Data in CIF | 3m9d_validation.cif.gz | 126.2 KB | Display | |
| Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/m9/3m9d ftp://data.pdbj.org/pub/pdb/validation_reports/m9/3m9d | HTTPS FTP |
-Related structure data
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Assembly
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| Unit cell |
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| Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments: Component-ID: 1 / Refine code: 2
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