登録情報 | データベース: PDB / ID: 3m63 |
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タイトル | Crystal structure of Ufd2 in complex with the ubiquitin-like (UBL) domain of Dsk2 |
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要素 | - Ubiquitin conjugation factor E4
- Ubiquitin domain-containing protein DSK2
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キーワード | LIGASE/PROTEIN BINDING / Armadillo-like repeats / Ubl conjugation pathway / Nucleus / Phosphoprotein / LIGASE-PROTEIN BINDING complex |
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機能・相同性 | 機能・相同性情報
Cargo recognition for clathrin-mediated endocytosis / spindle pole body duplication / protein localization to vacuole / cellular response to ethanol / ubiquitin-ubiquitin ligase activity / K48-linked polyubiquitin modification-dependent protein binding / Antigen processing: Ubiquitination & Proteasome degradation / polyubiquitin modification-dependent protein binding / protein K48-linked ubiquitination / ERAD pathway ...Cargo recognition for clathrin-mediated endocytosis / spindle pole body duplication / protein localization to vacuole / cellular response to ethanol / ubiquitin-ubiquitin ligase activity / K48-linked polyubiquitin modification-dependent protein binding / Antigen processing: Ubiquitination & Proteasome degradation / polyubiquitin modification-dependent protein binding / protein K48-linked ubiquitination / ERAD pathway / ubiquitin ligase complex / positive regulation of protein ubiquitination / RING-type E3 ubiquitin transferase / protein polyubiquitination / protein-macromolecule adaptor activity / ubiquitin-dependent protein catabolic process / protein ubiquitination / nucleus / cytoplasm / cytosol類似検索 - 分子機能 Ubiquitin conjugation factor E4 / Ubiquitin conjugation factor E4, core / Ubiquitin elongating factor core / : / Heat shock chaperonin-binding / Heat shock chaperonin-binding motif. / U-box domain / U-box domain profile. / Modified RING finger domain / U-box domain ...Ubiquitin conjugation factor E4 / Ubiquitin conjugation factor E4, core / Ubiquitin elongating factor core / : / Heat shock chaperonin-binding / Heat shock chaperonin-binding motif. / U-box domain / U-box domain profile. / Modified RING finger domain / U-box domain / Ubiquitin associated domain / Ubiquitin-associated domain / Ubiquitin-associated domain (UBA) profile. / UBA-like superfamily / Zinc/RING finger domain, C3HC4 (zinc finger) / Herpes Virus-1 / Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 / Ubiquitin domain signature. / Ubiquitin conserved site / Ubiquitin-like (UB roll) / Ubiquitin family / Ubiquitin homologues / Ubiquitin domain profile. / Ubiquitin-like domain / Zinc finger, RING/FYVE/PHD-type / Ubiquitin-like domain superfamily / Roll / 2-Layer Sandwich / Alpha Beta類似検索 - ドメイン・相同性 : / Ubiquitin domain-containing protein DSK2 / E4 ubiquitin-protein ligase UFD2類似検索 - 構成要素 |
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生物種 | ![](img/tx_yeast.gif) Saccharomyces cerevisiae (パン酵母) |
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手法 | X線回折 / シンクロトロン / 分子置換 / 解像度: 2.4 Å |
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データ登録者 | Haenzelmann, P. / Schindelin, H. |
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引用 | ジャーナル: J.Biol.Chem. / 年: 2010 タイトル: The yeast E4 ubiquitin ligase Ufd2 interacts with the ubiquitin-like domains of Rad23 and Dsk2 via a novel and distinct ubiquitin-like binding domain. 著者: Hanzelmann, P. / Stingele, J. / Hofmann, K. / Schindelin, H. / Raasi, S. |
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履歴 | 登録 | 2010年3月15日 | 登録サイト: RCSB / 処理サイト: RCSB |
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改定 1.0 | 2010年4月28日 | Provider: repository / タイプ: Initial release |
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改定 1.1 | 2011年7月13日 | Group: Advisory / Version format compliance |
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改定 1.2 | 2013年9月25日 | Group: Derived calculations |
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改定 1.3 | 2021年10月6日 | Group: Database references / Derived calculations カテゴリ: database_2 / pdbx_struct_conn_angle ...database_2 / pdbx_struct_conn_angle / struct_conn / struct_ref_seq_dif / struct_site Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_struct_conn_angle.ptnr1_auth_comp_id / _pdbx_struct_conn_angle.ptnr1_auth_seq_id / _pdbx_struct_conn_angle.ptnr1_label_asym_id / _pdbx_struct_conn_angle.ptnr1_label_atom_id / _pdbx_struct_conn_angle.ptnr1_label_comp_id / _pdbx_struct_conn_angle.ptnr3_auth_comp_id / _pdbx_struct_conn_angle.ptnr3_auth_seq_id / _pdbx_struct_conn_angle.ptnr3_label_asym_id / _pdbx_struct_conn_angle.ptnr3_label_atom_id / _pdbx_struct_conn_angle.ptnr3_label_comp_id / _pdbx_struct_conn_angle.value / _struct_conn.pdbx_dist_value / _struct_conn.ptnr1_auth_comp_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr1_label_atom_id / _struct_conn.ptnr1_label_comp_id / _struct_conn.ptnr2_auth_comp_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id / _struct_conn.ptnr2_label_atom_id / _struct_conn.ptnr2_label_comp_id / _struct_ref_seq_dif.details / _struct_site.pdbx_auth_asym_id / _struct_site.pdbx_auth_comp_id / _struct_site.pdbx_auth_seq_id |
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改定 1.4 | 2023年9月6日 | Group: Data collection / Refinement description カテゴリ: chem_comp_atom / chem_comp_bond / pdbx_initial_refinement_model |
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