Resolution: 3.2→3.31 Å / Redundancy: 6.7 % / Rmerge(I) obs: 0.521 / Mean I/σ(I) obs: 3.87 / % possible all: 99.7
-
Processing
Software
Name
Version
Classification
HKL-2000
datacollection
PHASES
phasing
REFMAC
5.5.0109
refinement
HKL-2000
datareduction
HKL-2000
datascaling
Refinement
Method to determine structure: MOLECULAR REPLACEMENT / Resolution: 3.2→29.58 Å / Cor.coef. Fo:Fc: 0.93 / Cor.coef. Fo:Fc free: 0.862 / SU B: 55.671 / SU ML: 0.438 / Cross valid method: THROUGHOUT / ESU R Free: 0.58 / Stereochemistry target values: MAXIMUM LIKELIHOOD / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.27638
1973
5 %
RANDOM
Rwork
0.19147
-
-
-
obs
0.19568
37261
99.51 %
-
all
-
39260
-
-
Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.4 Å / Solvent model: MASK
Displacement parameters
Biso mean: 48.364 Å2
Baniso -1
Baniso -2
Baniso -3
1-
0 Å2
0 Å2
0 Å2
2-
-
0 Å2
0 Å2
3-
-
-
0 Å2
Refinement step
Cycle: LAST / Resolution: 3.2→29.58 Å
Protein
Nucleic acid
Ligand
Solvent
Total
Num. atoms
15040
0
156
188
15384
Refine LS restraints
Refine-ID
Type
Dev ideal
Dev ideal target
Number
X-RAY DIFFRACTION
r_bond_refined_d
0.005
0.022
15507
X-RAY DIFFRACTION
r_bond_other_d
0
0.02
10390
X-RAY DIFFRACTION
r_angle_refined_deg
0.686
1.96
21022
X-RAY DIFFRACTION
r_angle_other_deg
0.585
3
25269
X-RAY DIFFRACTION
r_dihedral_angle_1_deg
7.412
5
1866
X-RAY DIFFRACTION
r_dihedral_angle_2_deg
41.138
24.274
751
X-RAY DIFFRACTION
r_dihedral_angle_3_deg
20.582
15
2647
X-RAY DIFFRACTION
r_dihedral_angle_4_deg
18.823
15
96
X-RAY DIFFRACTION
r_chiral_restr
0.041
0.2
2340
X-RAY DIFFRACTION
r_gen_planes_refined
0.007
0.02
17151
X-RAY DIFFRACTION
r_gen_planes_other
0.001
0.02
3223
X-RAY DIFFRACTION
r_nbd_refined
X-RAY DIFFRACTION
r_nbd_other
X-RAY DIFFRACTION
r_nbtor_refined
X-RAY DIFFRACTION
r_nbtor_other
X-RAY DIFFRACTION
r_xyhbond_nbd_refined
X-RAY DIFFRACTION
r_xyhbond_nbd_other
X-RAY DIFFRACTION
r_metal_ion_refined
X-RAY DIFFRACTION
r_metal_ion_other
X-RAY DIFFRACTION
r_symmetry_vdw_refined
X-RAY DIFFRACTION
r_symmetry_vdw_other
X-RAY DIFFRACTION
r_symmetry_hbond_refined
X-RAY DIFFRACTION
r_symmetry_hbond_other
X-RAY DIFFRACTION
r_symmetry_metal_ion_refined
X-RAY DIFFRACTION
r_symmetry_metal_ion_other
X-RAY DIFFRACTION
r_mcbond_it
0.472
1.5
9382
X-RAY DIFFRACTION
r_mcbond_other
0.076
1.5
3756
X-RAY DIFFRACTION
r_mcangle_it
0.909
2
15164
X-RAY DIFFRACTION
r_scbond_it
1.271
3
6125
X-RAY DIFFRACTION
r_scangle_it
2.207
4.5
5858
X-RAY DIFFRACTION
r_rigid_bond_restr
X-RAY DIFFRACTION
r_sphericity_free
X-RAY DIFFRACTION
r_sphericity_bonded
Refine LS restraints NCS
Refine-ID: X-RAY DIFFRACTION
Ens-ID
Dom-ID
Auth asym-ID
Number
Type
Rms dev position (Å)
Weight position
1
1
A
1842
TIGHTPOSITIONAL
0.34
0.05
1
2
B
1842
TIGHTPOSITIONAL
0.48
0.05
1
3
C
1842
TIGHTPOSITIONAL
0.35
0.05
1
1
A
2395
LOOSEPOSITIONAL
0.7
5
1
2
B
2395
LOOSEPOSITIONAL
0.8
5
1
3
C
2395
LOOSEPOSITIONAL
0.71
5
1
1
A
1842
TIGHTTHERMAL
2.09
0.5
1
2
B
1842
TIGHTTHERMAL
3.19
0.5
1
3
C
1842
TIGHTTHERMAL
3.72
0.5
1
1
A
2395
LOOSETHERMAL
2.51
10
1
2
B
2395
LOOSETHERMAL
3.29
10
1
3
C
2395
LOOSETHERMAL
3.75
10
2
1
A
1830
TIGHTPOSITIONAL
0.34
0.05
2
1
A
2388
LOOSEPOSITIONAL
0.65
5
2
1
A
1830
TIGHTTHERMAL
3.62
0.5
2
1
A
2388
LOOSETHERMAL
3.68
10
3
1
A
255
TIGHTPOSITIONAL
0.23
0.05
3
1
A
376
LOOSEPOSITIONAL
0.69
5
3
1
A
255
TIGHTTHERMAL
1.46
0.5
3
1
A
376
LOOSETHERMAL
2.89
10
4
1
A
3499
LOOSEPOSITIONAL
0.53
5
4
1
A
3499
LOOSETHERMAL
7.72
10
LS refinement shell
Resolution: 3.2→3.286 Å / Total num. of bins used: 20