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- PDB-3hti: Crystal structure of multidrug binding protein EbrR complexed wit... -
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Open data
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Basic information
Entry | Database: PDB / ID: 3hti | ||||||
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Title | Crystal structure of multidrug binding protein EbrR complexed with malachite green | ||||||
![]() | EbrA repressor | ||||||
![]() | DNA BINDING PROTEIN / TetR Family / multidrug resistance / multidrug binding protein / DNA-binding / Transcription / Transcription regulation | ||||||
Function / homology | ![]() transcription cis-regulatory region binding / DNA-binding transcription factor activity Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Dong, J. / Ni, L. / Schumacher, M. / Brennan, R. | ||||||
![]() | ![]() Title: Structural plasticity is key to multiple ligand binding by the multidrug binding regulator EbrR Authors: Dong, J. / Ni, L. / Schumacher, M. / Brennan, R. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 48 KB | Display | ![]() |
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PDB format | ![]() | 33 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 716.5 KB | Display | ![]() |
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Full document | ![]() | 722.7 KB | Display | |
Data in XML | ![]() | 9.7 KB | Display | |
Data in CIF | ![]() | 12.2 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 3htaSC ![]() 3hthC ![]() 3htjC S: Starting model for refinement C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 23266.268 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() |
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#2: Chemical | ChemComp-MGR / |
#3: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.45 Å3/Da / Density % sol: 49.89 % |
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Crystal grow | Temperature: 295 K / pH: 6.8 Details: 50% Tacsimate, 0.1 M Magnesium sulfate, 0.1 M Cacodylate, pH 6.8, VAPOR DIFFUSION, HANGING DROP, temperature 295K |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() |
Detector | Type: RIGAKU RAXIS HTC / Detector: IMAGE PLATE / Date: Sep 21, 2007 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.54178 Å / Relative weight: 1 |
Reflection | Resolution: 2.5→30.06 Å / Num. obs: 8937 / Redundancy: 4.4 % / Rmerge(I) obs: 0.031 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: PDB ENTRY 3HTA Resolution: 2.5→30.06 Å / Isotropic thermal model: ANISOTROPIC / Cross valid method: THROUGHOUT / σ(F): 0
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Solvent computation | Bsol: 55.1415 Å2 / ksol: 0.35 e/Å3 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters |
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Refinement step | Cycle: LAST / Resolution: 2.5→30.06 Å
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Refine LS restraints |
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