porphyrin-containing compound catabolic process / uroporphyrinogen decarboxylase / uroporphyrinogen decarboxylase activity / porphyrin-containing compound metabolic process / heme B biosynthetic process / heme O biosynthetic process / heme A biosynthetic process / protoporphyrinogen IX biosynthetic process / Heme biosynthesis / heme biosynthetic process ...porphyrin-containing compound catabolic process / uroporphyrinogen decarboxylase / uroporphyrinogen decarboxylase activity / porphyrin-containing compound metabolic process / heme B biosynthetic process / heme O biosynthetic process / heme A biosynthetic process / protoporphyrinogen IX biosynthetic process / Heme biosynthesis / heme biosynthetic process / nucleoplasm / cytosol 類似検索 - 分子機能
冗長度: 5.9 % / Av σ(I) over netI: 15.2 / 数: 182847 / Rmerge(I) obs: 0.084 / Χ2: 1.02 / D res high: 2 Å / D res low: 40 Å / Num. obs: 31077 / % possible obs: 100
Diffraction reflection shell
最高解像度 (Å)
最低解像度 (Å)
% possible obs (%)
ID
Rmerge(I) obs
Chi squared
Redundancy
4.31
40
99.8
1
0.053
1.055
5.7
3.42
4.31
99.9
1
0.069
1.016
5.9
2.99
3.42
100
1
0.087
1
6
2.71
2.99
100
1
0.12
1.001
6
2.52
2.71
100
1
0.162
1.02
6
2.37
2.52
100
1
0.205
1.029
6
2.25
2.37
100
1
0.271
1.047
5.9
2.15
2.25
100
1
0.35
1.027
5.9
2.07
2.15
100
1
0.446
1.058
5.8
2
2.07
100
1
0.585
0.947
5.8
反射
解像度: 2→40 Å / Num. obs: 31077 / % possible obs: 100 % / 冗長度: 5.9 % / Rmerge(I) obs: 0.084 / Χ2: 1.02 / Net I/σ(I): 15.195
反射 シェル
解像度 (Å)
冗長度 (%)
Rmerge(I) obs
Num. unique all
Χ2
Diffraction-ID
% possible all
2-2.07
5.8
0.585
3068
0.947
1
100
2.07-2.15
5.8
0.446
3081
1.058
1
100
2.15-2.25
5.9
0.35
3063
1.027
1
100
2.25-2.37
5.9
0.271
3059
1.047
1
100
2.37-2.52
6
0.205
3093
1.029
1
100
2.52-2.71
6
0.162
3103
1.02
1
100
2.71-2.99
6
0.12
3098
1.001
1
100
2.99-3.42
6
0.087
3116
1
1
100
3.42-4.31
5.9
0.069
3148
1.016
1
99.9
4.31-40
5.7
0.053
3248
1.055
1
99.8
-
解析
ソフトウェア
名称
バージョン
分類
NB
DENZO
データ削減
SCALEPACK
データスケーリング
REFMAC
精密化
PDB_EXTRACT
3.006
データ抽出
精密化
解像度: 2→30.7 Å / Cor.coef. Fo:Fc: 0.96 / Cor.coef. Fo:Fc free: 0.937 / WRfactor Rfree: 0.256 / WRfactor Rwork: 0.215 / Occupancy max: 1 / Occupancy min: 1 / FOM work R set: 0.817 / SU B: 4.077 / SU ML: 0.114 / SU R Cruickshank DPI: 0.162 / SU Rfree: 0.154 / 交差検証法: THROUGHOUT / σ(F): 0 / ESU R: 0.162 / ESU R Free: 0.154 / 立体化学のターゲット値: MAXIMUM LIKELIHOOD 詳細: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES: REFINED INDIVIDUALLY
Rfactor
反射数
%反射
Selection details
Rfree
0.24
1257
4.1 %
RANDOM
Rwork
0.194
-
-
-
obs
0.196
30828
99.86 %
-
溶媒の処理
イオンプローブ半径: 0.8 Å / 減衰半径: 0.8 Å / VDWプローブ半径: 1.2 Å / 溶媒モデル: MASK