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Yorodumi- PDB-3fbv: Crystal structure of the oligomer formed by the kinase-ribonuclea... -
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Open data
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Basic information
| Entry | Database: PDB / ID: 3fbv | ||||||
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| Title | Crystal structure of the oligomer formed by the kinase-ribonuclease domain of Ire1 | ||||||
Components | Serine/threonine-protein kinase/endoribonuclease IRE1 | ||||||
Keywords | TRANSFERASE / HYDROLASE / IRE1 / RNase / ribonuclease / complex / kinase / inhibitor / oligomer / cytoplasmic / APY29 / aminopyrazole / ATP-binding / Endoplasmic reticulum / Glycoprotein / Magnesium / Membrane / Metal-binding / Multifunctional enzyme / Nucleotide-binding / Phosphoprotein / Serine/threonine-protein kinase / Transcription / Transcription regulation / Transmembrane / Unfolded protein response | ||||||
| Function / homology | Function and homology informationIRE1alpha activates chaperones / Ire1 complex / IRE1-TRAF2-ASK1 complex / fungal-type cell wall organization / inositol metabolic process / protein localization to Golgi apparatus / Hydrolases; Acting on ester bonds; Endoribonucleases producing 5'-phosphomonoesters / IRE1-mediated unfolded protein response / intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress / endoplasmic reticulum unfolded protein response ...IRE1alpha activates chaperones / Ire1 complex / IRE1-TRAF2-ASK1 complex / fungal-type cell wall organization / inositol metabolic process / protein localization to Golgi apparatus / Hydrolases; Acting on ester bonds; Endoribonucleases producing 5'-phosphomonoesters / IRE1-mediated unfolded protein response / intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress / endoplasmic reticulum unfolded protein response / RNA endonuclease activity / response to endoplasmic reticulum stress / mRNA processing / unfolded protein binding / non-specific serine/threonine protein kinase / protein kinase activity / protein serine kinase activity / protein serine/threonine kinase activity / endoplasmic reticulum membrane / endoplasmic reticulum / ATP binding / metal ion binding / identical protein binding / nucleus Similarity search - Function | ||||||
| Biological species | ![]() | ||||||
| Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 3.2 Å | ||||||
Authors | Korennykh, A.V. / Egea, P.F. / Korostelev, A.A. / Finer-Moore, J. / Zhang, C. / Shokat, K.M. / Stroud, R.M. / Walter, P. | ||||||
Citation | Journal: Nature / Year: 2009Title: The unfolded protein response signals through high-order assembly of Ire1. Authors: Korennykh, A.V. / Egea, P.F. / Korostelev, A.A. / Finer-Moore, J. / Zhang, C. / Shokat, K.M. / Stroud, R.M. / Walter, P. | ||||||
| History |
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Structure visualization
| Structure viewer | Molecule: Molmil Jmol/JSmol |
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Downloads & links
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Download
| PDBx/mmCIF format | 3fbv.cif.gz | 2.3 MB | Display | PDBx/mmCIF format |
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| PDB format | pdb3fbv.ent.gz | 2 MB | Display | PDB format |
| PDBx/mmJSON format | 3fbv.json.gz | Tree view | PDBx/mmJSON format | |
| Others | Other downloads |
-Validation report
| Summary document | 3fbv_validation.pdf.gz | 4.8 MB | Display | wwPDB validaton report |
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| Full document | 3fbv_full_validation.pdf.gz | 5.1 MB | Display | |
| Data in XML | 3fbv_validation.xml.gz | 234 KB | Display | |
| Data in CIF | 3fbv_validation.cif.gz | 290.5 KB | Display | |
| Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/fb/3fbv ftp://data.pdbj.org/pub/pdb/validation_reports/fb/3fbv | HTTPS FTP |
-Related structure data
| Related structure data | ![]() 2rioS S: Starting model for refinement |
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| Similar structure data |
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Links
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Assembly
| Deposited unit | ![]()
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| Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
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