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- PDB-3efy: Structure of the Cyclomodulin Cif from Pathogenic Escherichia coli -
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Open data
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Basic information
Entry | Database: PDB / ID: 3efy | ||||||
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Title | Structure of the Cyclomodulin Cif from Pathogenic Escherichia coli | ||||||
![]() | Cif (Cell cycle inhibiting factor) | ||||||
![]() | CELL CYCLE / Cif / bacteria / virulence factor / type III secretion / E. coli / Plasmid | ||||||
Function / homology | Protein-glutamine deamidase Cif / Cycle inhibiting factor (CIF) / cell division / Cell cycle inhibiting factor![]() | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Stebbins, C.E. / Hsu, Y. | ||||||
![]() | ![]() Title: Structure of the cyclomodulin Cif from pathogenic Escherichia coli. Authors: Hsu, Y. / Jubelin, G. / Taieb, F. / Nougayrede, J.P. / Oswald, E. / Stebbins, C.E. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 101.3 KB | Display | ![]() |
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PDB format | ![]() | 77.8 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 436.1 KB | Display | ![]() |
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Full document | ![]() | 442.8 KB | Display | |
Data in XML | ![]() | 24.7 KB | Display | |
Data in CIF | ![]() | 38.6 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components on special symmetry positions |
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Components
#1: Protein | Mass: 22440.434 Da / Num. of mol.: 2 / Fragment: UNP residues 100-282 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.74 Å3/Da / Density % sol: 67.12 % |
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Crystal grow | Temperature: 277.15 K / Method: vapor diffusion, hanging drop / pH: 3.8 Details: 1.85M Sodium Malonate, 0.1M tri-sodium citrate dihydrate, pH 3.8, VAPOR DIFFUSION, HANGING DROP, temperature 277.15K |
-Data collection
Diffraction | Mean temperature: 93 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC QUANTUM 315 / Detector: CCD / Date: Apr 10, 2005 |
Radiation | Protocol: SINGLE WAVELENGTH / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Resolution: 1.7→50 Å / Num. obs: 74589 |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 21.78 Å2
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Refinement step | Cycle: LAST / Resolution: 1.7→45.33 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 1.7→1.744 Å / Total num. of bins used: 20
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