登録情報 | データベース: PDB / ID: 3cph |
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タイトル | Crystal structure of Sec4 in complex with Rab-GDI |
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要素 | - Rab GDP-dissociation inhibitor
- Ras-related protein SEC4
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キーワード | PROTEIN TRANSPORT / Rab GTPase / prenylation / vesicular transport / Cytoplasm / Cytoplasmic vesicle / Exocytosis / GTP-binding / Lipoprotein / Membrane / Nucleotide-binding / Palmitate / Phosphoprotein / GTPase activation |
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機能・相同性 | 機能・相同性情報
Rab GDP-dissociation inhibitor activity / ascospore-type prospore assembly / membrane addition at site of cytokinesis / RAB geranylgeranylation / RAB GEFs exchange GTP for GDP on RABs / incipient cellular bud site / vesicle fusion / Golgi to plasma membrane transport / cellular bud neck / mating projection tip ...Rab GDP-dissociation inhibitor activity / ascospore-type prospore assembly / membrane addition at site of cytokinesis / RAB geranylgeranylation / RAB GEFs exchange GTP for GDP on RABs / incipient cellular bud site / vesicle fusion / Golgi to plasma membrane transport / cellular bud neck / mating projection tip / small GTPase-mediated signal transduction / transport vesicle membrane / exocytosis / transport vesicle / vesicle-mediated transport / Neutrophil degranulation / GTPase activator activity / autophagy / protein transport / vesicle / mitochondrial outer membrane / endosome / GTPase activity / GTP binding / endoplasmic reticulum / mitochondrion / plasma membrane / cytosol類似検索 - 分子機能 Rab GDI protein / Guanine Nucleotide Dissociation Inhibitor; domain 2 / Guanine Nucleotide Dissociation Inhibitor, domain 2 / GDP dissociation inhibitor / GDP dissociation inhibitor / : / Guanine Nucleotide Dissociation Inhibitor, domain 1 / Guanine Nucleotide Dissociation Inhibitor; domain 1 / ARF-like small GTPases; ARF, ADP-ribosylation factor / Small GTPase Rab domain profile. ...Rab GDI protein / Guanine Nucleotide Dissociation Inhibitor; domain 2 / Guanine Nucleotide Dissociation Inhibitor, domain 2 / GDP dissociation inhibitor / GDP dissociation inhibitor / : / Guanine Nucleotide Dissociation Inhibitor, domain 1 / Guanine Nucleotide Dissociation Inhibitor; domain 1 / ARF-like small GTPases; ARF, ADP-ribosylation factor / Small GTPase Rab domain profile. / Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases / FAD/NAD(P)-binding domain / FAD/NAD(P)-binding domain / Rho (Ras homology) subfamily of Ras-like small GTPases / Ras subfamily of RAS small GTPases / Small GTPase / Ras family / 3-Layer(bba) Sandwich / Rab subfamily of small GTPases / FAD/NAD(P)-binding domain superfamily / Small GTP-binding protein domain / P-loop containing nucleotide triphosphate hydrolases / Rossmann fold / P-loop containing nucleoside triphosphate hydrolase / 2-Layer Sandwich / Orthogonal Bundle / 3-Layer(aba) Sandwich / Mainly Alpha / Alpha Beta類似検索 - ドメイン・相同性 GUANOSINE-5'-DIPHOSPHATE / Ras-related protein SEC4 / Rab GDP-dissociation inhibitor類似検索 - 構成要素 |
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生物種 |  Saccharomyces cerevisiae (パン酵母) |
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手法 | X線回折 / シンクロトロン / 分子置換 / 解像度: 2.9 Å |
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データ登録者 | Kravchenko, S. / Ignatev, A. / Goody, R.S. / Rak, A. / Pylypenko, O. |
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引用 | ジャーナル: J.Biol.Chem. / 年: 2008 タイトル: A structural model of the GDP dissociation inhibitor rab membrane extraction mechanism. 著者: Ignatev, A. / Kravchenko, S. / Rak, A. / Goody, R.S. / Pylypenko, O. |
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履歴 | 登録 | 2008年3月31日 | 登録サイト: RCSB / 処理サイト: PDBJ |
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改定 1.0 | 2008年5月6日 | Provider: repository / タイプ: Initial release |
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改定 1.1 | 2011年7月13日 | Group: Version format compliance |
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改定 1.2 | 2023年11月1日 | Group: Data collection / Database references ...Data collection / Database references / Derived calculations / Refinement description カテゴリ: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model / struct_site Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _struct_site.pdbx_auth_asym_id / _struct_site.pdbx_auth_comp_id / _struct_site.pdbx_auth_seq_id |
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