- PDB-3c5g: Structure of a ternary complex of the R517K Pol lambda mutant -
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基本情報
登録情報
データベース: PDB / ID: 3c5g
タイトル
Structure of a ternary complex of the R517K Pol lambda mutant
要素
DNA (5'-D(*DCP*DAP*DGP*DTP*DAP*(2DT))-3')
DNA (5'-D(*DCP*DGP*DGP*DCP*DAP*DAP*DTP*DAP*DCP*DTP*DG)-3')
DNA (5'-D(P*DGP*DCP*DCP*DG)-3')
DNA polymerase lambda
キーワード
Transferase/DNA / Lyase/DNA / helix-hairpin-helix / DNA damage / DNA repair / DNA replication / DNA synthesis / DNA-binding / DNA-directed DNA polymerase / Lyase / Manganese / Metal-binding / Nucleotidyltransferase / Nucleus / Phosphoprotein / Transferase / Lyase-DNA COMPLEX / Transferase-DNA
機能・相同性
機能・相同性情報
DNA biosynthetic process / 付加脱離酵素(リアーゼ); 炭素-酸素リアーゼ類; その他の炭素-酸素リアーゼ / 5'-deoxyribose-5-phosphate lyase activity / somatic hypermutation of immunoglobulin genes / base-excision repair, gap-filling / nucleotide-excision repair / Nonhomologous End-Joining (NHEJ) / double-strand break repair via homologous recombination / double-strand break repair via nonhomologous end joining / site of double-strand break ...DNA biosynthetic process / 付加脱離酵素(リアーゼ); 炭素-酸素リアーゼ類; その他の炭素-酸素リアーゼ / 5'-deoxyribose-5-phosphate lyase activity / somatic hypermutation of immunoglobulin genes / base-excision repair, gap-filling / nucleotide-excision repair / Nonhomologous End-Joining (NHEJ) / double-strand break repair via homologous recombination / double-strand break repair via nonhomologous end joining / site of double-strand break / DNA replication / DNA-directed DNA polymerase / DNA-directed DNA polymerase activity / DNA binding / nucleoplasm / nucleus / metal ion binding 類似検索 - 分子機能
Beta Polymerase; domain 3 / DNA polymerase, thumb domain / DNA polymerase family X, beta-like / DNA polymerase beta, N-terminal domain-like / DNA polymerase beta, palm domain / DNA polymerase beta palm / DNA polymerase lambda, fingers domain / Fingers domain of DNA polymerase lambda / DNA-directed DNA polymerase X / DNA polymerase beta-like, N-terminal domain ...Beta Polymerase; domain 3 / DNA polymerase, thumb domain / DNA polymerase family X, beta-like / DNA polymerase beta, N-terminal domain-like / DNA polymerase beta, palm domain / DNA polymerase beta palm / DNA polymerase lambda, fingers domain / Fingers domain of DNA polymerase lambda / DNA-directed DNA polymerase X / DNA polymerase beta-like, N-terminal domain / Helix-hairpin-helix domain / DNA polymerase X family / DNA polymerase family X, binding site / DNA polymerase family X signature. / DNA polymerase lambda lyase domain superfamily / DNA polymerase family X / DNA polymerase beta, thumb domain / DNA polymerase beta thumb / DNA polymerase, thumb domain superfamily / Beta Polymerase, domain 2 / Beta Polymerase; domain 2 / BRCT domain profile. / BRCT domain / BRCT domain superfamily / Nucleotidyltransferase superfamily / 5' to 3' exonuclease, C-terminal subdomain / DNA polymerase; domain 1 / 2-Layer Sandwich / Orthogonal Bundle / Mainly Alpha / Alpha Beta 類似検索 - ドメイン・相同性
2',3'-DIDEOXY-THYMIDINE-5'-TRIPHOSPHATE / DNA / DNA (> 10) / DNA polymerase lambda 類似検索 - 構成要素
#241 - 2020年1月 20年の分子を振り返って (Twenty Years of Molecules) 類似性 (2)
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集合体
登録構造単位
A: DNA polymerase lambda T: DNA (5'-D(*DCP*DGP*DGP*DCP*DAP*DAP*DTP*DAP*DCP*DTP*DG)-3') P: DNA (5'-D(*DCP*DAP*DGP*DTP*DAP*(2DT))-3') D: DNA (5'-D(P*DGP*DCP*DCP*DG)-3') B: DNA polymerase lambda U: DNA (5'-D(*DCP*DGP*DGP*DCP*DAP*DAP*DTP*DAP*DCP*DTP*DG)-3') Q: DNA (5'-D(*DCP*DAP*DGP*DTP*DAP*(2DT))-3') E: DNA (5'-D(P*DGP*DCP*DCP*DG)-3') ヘテロ分子
A: DNA polymerase lambda T: DNA (5'-D(*DCP*DGP*DGP*DCP*DAP*DAP*DTP*DAP*DCP*DTP*DG)-3') P: DNA (5'-D(*DCP*DAP*DGP*DTP*DAP*(2DT))-3') D: DNA (5'-D(P*DGP*DCP*DCP*DG)-3') ヘテロ分子
B: DNA polymerase lambda U: DNA (5'-D(*DCP*DGP*DGP*DCP*DAP*DAP*DTP*DAP*DCP*DTP*DG)-3') Q: DNA (5'-D(*DCP*DAP*DGP*DTP*DAP*(2DT))-3') E: DNA (5'-D(P*DGP*DCP*DCP*DG)-3') ヘテロ分子