Phosphorylation of CI / compound eye cone cell differentiation / Phosphorylation of SMO / compound eye photoreceptor cell differentiation / Phosphorylation of PER and TIM / eye photoreceptor cell differentiation / positive regulation of Ras protein signal transduction / cell surface receptor protein tyrosine kinase signaling pathway / visual perception / epidermal growth factor receptor signaling pathway ...Phosphorylation of CI / compound eye cone cell differentiation / Phosphorylation of SMO / compound eye photoreceptor cell differentiation / Phosphorylation of PER and TIM / eye photoreceptor cell differentiation / positive regulation of Ras protein signal transduction / cell surface receptor protein tyrosine kinase signaling pathway / visual perception / epidermal growth factor receptor signaling pathway / cytoplasmic side of plasma membrane / scaffold protein binding / positive regulation of ERK1 and ERK2 cascade / cytosol / cytoplasm Similarity search - Function
Method to determine structure: MOLECULAR REPLACEMENT / Resolution: 1.9→19.88 Å / Cor.coef. Fo:Fc: 0.924 / Cor.coef. Fo:Fc free: 0.9 / SU B: 3.851 / SU ML: 0.116 / Cross valid method: THROUGHOUT / σ(F): 0 / ESU R: 0.189 / ESU R Free: 0.173 Stereochemistry target values: MAXIMUM LIKELIHOOD WITH PHASES Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.265
735
5 %
RANDOM
Rwork
0.214
-
-
-
all
0.217
14633
-
-
obs
0.217
14633
99.6 %
-
Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.4 Å / Solvent model: MASK
Displacement parameters
Biso mean: 22.095 Å2
Baniso -1
Baniso -2
Baniso -3
1-
0.01 Å2
0 Å2
0 Å2
2-
-
-0.01 Å2
0 Å2
3-
-
-
0 Å2
Refinement step
Cycle: LAST / Resolution: 1.9→19.88 Å
Protein
Nucleic acid
Ligand
Solvent
Total
Num. atoms
1276
0
0
290
1566
Refine LS restraints
Refine-ID
Type
Dev ideal
Dev ideal target
Number
X-RAY DIFFRACTION
r_bond_refined_d
0.018
0.021
1309
X-RAY DIFFRACTION
r_angle_refined_deg
1.408
1.926
1764
X-RAY DIFFRACTION
r_dihedral_angle_1_deg
4.839
5
149
X-RAY DIFFRACTION
r_dihedral_angle_2_deg
33.277
22.113
71
X-RAY DIFFRACTION
r_dihedral_angle_3_deg
15.96
15
248
X-RAY DIFFRACTION
r_dihedral_angle_4_deg
23.04
15
18
X-RAY DIFFRACTION
r_chiral_restr
0.101
0.2
191
X-RAY DIFFRACTION
r_gen_planes_refined
0.007
0.02
980
X-RAY DIFFRACTION
r_nbd_refined
0.326
0.2
772
X-RAY DIFFRACTION
r_nbtor_refined
0.313
0.2
908
X-RAY DIFFRACTION
r_xyhbond_nbd_refined
0.315
0.2
235
X-RAY DIFFRACTION
r_symmetry_vdw_refined
0.412
0.2
51
X-RAY DIFFRACTION
r_symmetry_hbond_refined
0.285
0.2
33
X-RAY DIFFRACTION
r_mcbond_it
1.272
1.5
774
X-RAY DIFFRACTION
r_mcangle_it
1.942
2
1208
X-RAY DIFFRACTION
r_scbond_it
3.399
3
637
X-RAY DIFFRACTION
r_scangle_it
5.043
4.5
556
LS refinement shell
Resolution: 1.9→1.949 Å / Total num. of bins used: 20
Rfactor
Num. reflection
% reflection
Rfree
0.306
52
-
Rwork
0.221
1015
-
all
-
1067
-
obs
-
-
100 %
+
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