Transport of connexons to the plasma membrane / response to human chorionic gonadotropin / gap junction-mediated intercellular transport / gap junction channel activity involved in cell communication by electrical coupling / epididymis development / Oligomerization of connexins into connexons / Transport of connexins along the secretory pathway / gap junction assembly / connexin complex / gap junction ...Transport of connexons to the plasma membrane / response to human chorionic gonadotropin / gap junction-mediated intercellular transport / gap junction channel activity involved in cell communication by electrical coupling / epididymis development / Oligomerization of connexins into connexons / Transport of connexins along the secretory pathway / gap junction assembly / connexin complex / gap junction / astrocyte projection / Gap junction assembly / gap junction channel activity / endoplasmic reticulum-Golgi intermediate compartment / inner ear development / decidualization / lateral plasma membrane / response to retinoic acid / cellular response to glucagon stimulus / cellular response to dexamethasone stimulus / response to ischemia / response to progesterone / sensory perception of sound / transmembrane transport / cell-cell signaling / response to estradiol / cellular response to oxidative stress / cell body / response to lipopolysaccharide / calcium ion binding / perinuclear region of cytoplasm / identical protein binding / plasma membrane Similarity search - Function
Gap junction channel protein cysteine-rich domain / Gap junction beta-2 protein (Cx26) / de novo design (two linked rop proteins) / Connexin / Connexin, N-terminal / Connexin, conserved site / Gap junction protein, cysteine-rich domain / Connexin, N-terminal domain superfamily / Connexin / Connexins signature 1. ...Gap junction channel protein cysteine-rich domain / Gap junction beta-2 protein (Cx26) / de novo design (two linked rop proteins) / Connexin / Connexin, N-terminal / Connexin, conserved site / Gap junction protein, cysteine-rich domain / Connexin, N-terminal domain superfamily / Connexin / Connexins signature 1. / Connexins signature 2. / Connexin homologues / Gap junction channel protein cysteine-rich domain / Up-down Bundle / Mainly Alpha Similarity search - Domain/homology
A: Gap junction beta-2 protein B: Gap junction beta-2 protein C: Gap junction beta-2 protein D: Gap junction beta-2 protein E: Gap junction beta-2 protein F: Gap junction beta-2 protein
A: Gap junction beta-2 protein B: Gap junction beta-2 protein C: Gap junction beta-2 protein D: Gap junction beta-2 protein E: Gap junction beta-2 protein F: Gap junction beta-2 protein
A: Gap junction beta-2 protein B: Gap junction beta-2 protein C: Gap junction beta-2 protein D: Gap junction beta-2 protein E: Gap junction beta-2 protein F: Gap junction beta-2 protein
THE GAP JUNCTION CHANNEL FUNCTIONS AS AN INTERCELLULAR CHANNEL IN DODECAMERIC STATE. ALTHOUGH THIS STRUCTURE HAS SIX SUBUNITS IN THE ASYMMETRIC UNIT, IT FORMS HOMO-DODECAMERWITH THE ANOTHER HEXAMER RELATED BY CRYSTALLOGRAPHIC TWO-FOLD.
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Components
#1: Protein
Gapjunctionbeta-2protein / Connexin-26 / Cx26
Mass: 26247.074 Da / Num. of mol.: 6 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Tissue: Liver / Plasmid: pBlueBac4.5 / Production host: Spodoptera frugiperda (fall armyworm) / Strain (production host): Sf9 / References: UniProt: P29033
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Experimental details
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Experiment
Experiment
Method: X-RAY DIFFRACTION / Number of used crystals: 11
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Sample preparation
Crystal
Density Matthews: 4.2 Å3/Da / Density % sol: 70.72 %
Resolution: 3.5→3.63 Å / Redundancy: 5.9 % / Rmerge(I) obs: 0.378 / Mean I/σ(I) obs: 3.1 / Num. unique all: 3266 / Rsym value: 0.378 / % possible all: 94.9
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Processing
Software
Name
Version
Classification
REFMAC
5.2.0019
refinement
DENZO
datareduction
SCALEPACK
datascaling
SHARP
phasing
Refinement
Method to determine structure: MIR / Resolution: 3.5→22 Å / Cor.coef. Fo:Fc: 0.863 / Cor.coef. Fo:Fc free: 0.823 / SU B: 39.893 / SU ML: 0.619 / Cross valid method: THROUGHOUT / ESU R Free: 0.735 / Stereochemistry target values: MAXIMUM LIKELIHOOD / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.35123
1565
5 %
RANDOM
Rwork
0.3368
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obs
0.33755
29595
94.6 %
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Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK