[日本語] English
- PDB-2ymd: Crystal structure of a mutant binding protein (5HTBP-AChBP) in co... -

+
データを開く


IDまたはキーワード:

読み込み中...

-
基本情報

登録情報
データベース: PDB / ID: 2ymd
タイトルCrystal structure of a mutant binding protein (5HTBP-AChBP) in complex with serotonin (5-hydroxytryptamine)
要素SOLUBLE ACETYLCHOLINE RECEPTOR
キーワードRECEPTOR / PENTAMERIC LIGAND-GATED ION CHANNEL
機能・相同性
機能・相同性情報


extracellular ligand-gated monoatomic ion channel activity / transmembrane signaling receptor activity / metal ion binding / identical protein binding / membrane
類似検索 - 分子機能
Acetylcholine Binding Protein; Chain: A, / Neurotransmitter-gated ion-channel ligand-binding domain / Neurotransmitter-gated ion-channel / Neurotransmitter-gated ion-channel ligand-binding domain / Neurotransmitter-gated ion-channel ligand-binding domain superfamily / Neurotransmitter-gated ion-channel ligand binding domain / Distorted Sandwich / Mainly Beta
類似検索 - ドメイン・相同性
PHOSPHATE ION / SEROTONIN / Soluble acetylcholine receptor
類似検索 - 構成要素
生物種APLYSIA CALIFORNICA (無脊椎動物)
手法X線回折 / シンクロトロン / 分子置換 / 解像度: 1.96 Å
データ登録者Kesters, D. / Thompson, A.J. / Brams, M. / Elk, R.v. / Spurny, R. / Geitmann, M. / Villalgordo, J.M. / Guskov, A. / Danielson, U.H. / Lummis, S.C.R. ...Kesters, D. / Thompson, A.J. / Brams, M. / Elk, R.v. / Spurny, R. / Geitmann, M. / Villalgordo, J.M. / Guskov, A. / Danielson, U.H. / Lummis, S.C.R. / Smit, A.B. / Ulens, C.
引用ジャーナル: Embo Rep. / : 2013
タイトル: Structural Basis of Ligand Recognition in 5-Ht(3) Receptors.
著者: Kesters, D. / Thompson, A.J. / Brams, M. / Van Elk, R. / Spurny, R. / Geitmann, M. / Villalgordo, J.M. / Guskov, A. / Helena Danielson, U. / Lummis, S.C. / Smit, A.B. / Ulens, C.
履歴
登録2012年10月9日登録サイト: PDBE / 処理サイト: PDBE
改定 1.02012年12月12日Provider: repository / タイプ: Initial release
改定 1.12013年1月30日Group: Database references
改定 1.22023年12月20日Group: Data collection / Database references ...Data collection / Database references / Derived calculations / Other / Refinement description
カテゴリ: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_database_status / pdbx_initial_refinement_model / struct_site
Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_database_status.status_code_sf / _struct_site.pdbx_auth_asym_id / _struct_site.pdbx_auth_comp_id / _struct_site.pdbx_auth_seq_id
改定 1.32024年11月13日Group: Structure summary
カテゴリ: pdbx_entry_details / pdbx_modification_feature
Item: _pdbx_entry_details.has_protein_modification

-
構造の表示

構造ビューア分子:
MolmilJmol/JSmol

ダウンロードとリンク

-
集合体

登録構造単位
A: SOLUBLE ACETYLCHOLINE RECEPTOR
B: SOLUBLE ACETYLCHOLINE RECEPTOR
C: SOLUBLE ACETYLCHOLINE RECEPTOR
D: SOLUBLE ACETYLCHOLINE RECEPTOR
E: SOLUBLE ACETYLCHOLINE RECEPTOR
F: SOLUBLE ACETYLCHOLINE RECEPTOR
G: SOLUBLE ACETYLCHOLINE RECEPTOR
H: SOLUBLE ACETYLCHOLINE RECEPTOR
I: SOLUBLE ACETYLCHOLINE RECEPTOR
J: SOLUBLE ACETYLCHOLINE RECEPTOR
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)244,93044
ポリマ-240,92910
非ポリマー4,00134
48,0102665
1


  • 登録構造と同一
  • ソフトウェアが定義した集合体
タイプ名称対称操作
identity operation1_555x,y,z1
Buried area46760 Å2
ΔGint-254.7 kcal/mol
Surface area76430 Å2
手法PISA
2
A: SOLUBLE ACETYLCHOLINE RECEPTOR
B: SOLUBLE ACETYLCHOLINE RECEPTOR
C: SOLUBLE ACETYLCHOLINE RECEPTOR
D: SOLUBLE ACETYLCHOLINE RECEPTOR
E: SOLUBLE ACETYLCHOLINE RECEPTOR
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)122,64924
ポリマ-120,4645
非ポリマー2,18519
905
タイプ名称対称操作
identity operation1_555x,y,z1
Buried area20760 Å2
ΔGint-116.5 kcal/mol
Surface area41320 Å2
手法PISA
3
F: SOLUBLE ACETYLCHOLINE RECEPTOR
G: SOLUBLE ACETYLCHOLINE RECEPTOR
H: SOLUBLE ACETYLCHOLINE RECEPTOR
I: SOLUBLE ACETYLCHOLINE RECEPTOR
J: SOLUBLE ACETYLCHOLINE RECEPTOR
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)122,28120
ポリマ-120,4645
非ポリマー1,81615
905
タイプ名称対称操作
identity operation1_555x,y,z1
Buried area20020 Å2
ΔGint-112.4 kcal/mol
Surface area41090 Å2
手法PISA
単位格子
Length a, b, c (Å)203.565, 140.064, 126.528
Angle α, β, γ (deg.)90.00, 99.08, 90.00
Int Tables number5
Space group name H-MC121
非結晶学的対称性 (NCS)NCS oper: (Code: given
Matrix: (-1, -0.029, -0.004), (-0.024, 0.725, 0.689), (-0.017, 0.689, -0.725)
ベクター: 52.963, 0.539, 0.403)

-
要素

#1: タンパク質
SOLUBLE ACETYLCHOLINE RECEPTOR / ACHBP


分子量: 24092.885 Da / 分子数: 10 / 断片: ACETYLCHOLINE BINDING DOMAIN, RESIDUES 20-231 / 変異: YES / 由来タイプ: 組換発現
由来: (組換発現) APLYSIA CALIFORNICA (無脊椎動物)
発現宿主: SPODOPTERA FRUGIPERDA (ツマジロクサヨトウ)
株 (発現宿主): SF21 / 参照: UniProt: Q8WSF8
#2: 化合物
ChemComp-SRO / SEROTONIN / 3-(2-AMINOETHYL)-1H-INDOL-5-OL / セロトニン


分子量: 176.215 Da / 分子数: 10 / 由来タイプ: 合成 / : C10H12N2O / コメント: 神経伝達物質*YM
#3: 化合物
ChemComp-GOL / GLYCEROL / GLYCERIN / PROPANE-1,2,3-TRIOL / グリセロ-ル


分子量: 92.094 Da / 分子数: 14 / 由来タイプ: 合成 / : C3H8O3
#4: 化合物
ChemComp-PO4 / PHOSPHATE ION / ホスファ-ト


分子量: 94.971 Da / 分子数: 10 / 由来タイプ: 合成 / : PO4
#5: 水 ChemComp-HOH / water


分子量: 18.015 Da / 分子数: 2665 / 由来タイプ: 天然 / : H2O
Has protein modificationY
非ポリマーの詳細SEROTONIN (SRO): SYNONYM 5-HYDROXYTRYPTAMINE
配列の詳細THE CONFLICTS BETWEEN THE UNIPROT AND PROTEIN SEQUENCE ARE DUE TO DIFFERENCES IN THE CLONING METHOD ...THE CONFLICTS BETWEEN THE UNIPROT AND PROTEIN SEQUENCE ARE DUE TO DIFFERENCES IN THE CLONING METHOD USED TO OBTAIN THE GENE.

-
実験情報

-
実験

実験手法: X線回折 / 使用した結晶の数: 1

-
試料調製

結晶マシュー密度: 3.21 Å3/Da / 溶媒含有率: 61.41 % / 解説: NONE
結晶化詳細: 400 MM (NH4)H2PO4

-
データ収集

回折平均測定温度: 100 K
放射光源由来: シンクロトロン / サイト: SLS / ビームライン: X06SA / 波長: 1
検出器タイプ: DECTRIS PILATUS 6M / 検出器: PIXEL / 日付: 2011年6月2日
放射プロトコル: SINGLE WAVELENGTH / 単色(M)・ラウエ(L): M / 散乱光タイプ: x-ray
放射波長波長: 1 Å / 相対比: 1
反射解像度: 1.96→46.9 Å / Num. obs: 249028 / % possible obs: 99.6 % / Observed criterion σ(I): 1 / 冗長度: 3.8 % / Biso Wilson estimate: 22.28 Å2 / Rmerge(I) obs: 0.01 / Net I/σ(I): 6.4
反射 シェル解像度: 1.96→2.19 Å / 冗長度: 3.6 % / Rmerge(I) obs: 0.08 / Mean I/σ(I) obs: 1 / % possible all: 99.6

-
解析

ソフトウェア
名称バージョン分類
PHENIX(PHENIX.REFINE)精密化
XDSデータ削減
SCALAデータスケーリング
MOLREP位相決定
精密化構造決定の手法: 分子置換
開始モデル: PDB ENTRY 2XYS
解像度: 1.96→46.903 Å / SU ML: 0.18 / σ(F): 1.42 / 位相誤差: 19.56 / 立体化学のターゲット値: ML
Rfactor反射数%反射
Rfree0.2011 2294 1 %
Rwork0.1591 --
obs0.1595 239406 95.78 %
溶媒の処理減衰半径: 1 Å / VDWプローブ半径: 1.2 Å / 溶媒モデル: FLAT BULK SOLVENT MODEL / Bsol: 2 Å2 / ksol: 2 e/Å3
原子変位パラメータBiso mean: 29.2 Å2
精密化ステップサイクル: LAST / 解像度: 1.96→46.903 Å
タンパク質核酸リガンド溶媒全体
原子数16864 0 264 2665 19793
拘束条件
Refine-IDタイプDev ideal
X-RAY DIFFRACTIONf_bond_d0.00717569
X-RAY DIFFRACTIONf_angle_d1.06123927
X-RAY DIFFRACTIONf_dihedral_angle_d14.0866321
X-RAY DIFFRACTIONf_chiral_restr0.0732624
X-RAY DIFFRACTIONf_plane_restr0.0053067
LS精密化 シェル
解像度 (Å)Rfactor RfreeNum. reflection RfreeRfactor RworkNum. reflection RworkRefine-ID% reflection obs (%)
1.9609-2.00360.28621200.259312058X-RAY DIFFRACTION78
2.0036-2.05020.31241380.235613761X-RAY DIFFRACTION89
2.0502-2.10140.22431360.212114212X-RAY DIFFRACTION92
2.1014-2.15830.23711380.199514470X-RAY DIFFRACTION94
2.1583-2.22180.23271440.196814718X-RAY DIFFRACTION95
2.2218-2.29350.2381440.188814802X-RAY DIFFRACTION96
2.2935-2.37540.23791430.176414981X-RAY DIFFRACTION97
2.3754-2.47060.23231470.173915090X-RAY DIFFRACTION98
2.4706-2.5830.2381460.17315098X-RAY DIFFRACTION98
2.583-2.71910.21931470.166115157X-RAY DIFFRACTION98
2.7191-2.88950.22281460.158215304X-RAY DIFFRACTION99
2.8895-3.11250.19321460.148315367X-RAY DIFFRACTION99
3.1125-3.42570.17621500.136415463X-RAY DIFFRACTION100
3.4257-3.92120.17671480.130115427X-RAY DIFFRACTION100
3.9212-4.93940.13651490.116115559X-RAY DIFFRACTION100
4.9394-46.91620.19171520.164115645X-RAY DIFFRACTION100
精密化 TLS

手法: refined / Refine-ID: X-RAY DIFFRACTION

IDL112)L122)L132)L222)L232)L332)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T112)T122)T132)T222)T232)T332)Origin x (Å)Origin y (Å)Origin z (Å)
12.713-3.62670.58896.35521.83216.73840.2181-0.69450.26150.3426-0.0861-0.1764-0.19310.3744-0.11530.1678-0.0873-0.02270.3047-0.07590.276744.9986-2.020520.4183
23.13090.80481.17768.3432-4.59963.3929-2.12180.16092.4123-0.28420.4002-2.0308-0.2932-0.06671.73110.6874-0.0692-0.18270.702-0.04030.877139.03818.386416.4779
38.05211.58272.93312.33712.59413.08510.12580.7620.4757-0.68690.1559-0.412-0.78480.6758-0.07170.3123-0.04960.07880.29130.10890.372128.46628.90973.6555
40.64170.64470.48312.0715-0.52380.62450.0176-0.0496-0.17580.0166-0.0198-0.05120.0530.0688-0.01430.1623-0.018-0.01840.1784-0.0310.117710.8648-11.94813.6799
54.93084.69-5.17174.513-4.93615.4235-0.27390.2416-0.3546-0.3950.0916-0.26120.60840.15890.31320.2219-0.03080.02950.202-0.0240.236525.635-8.6699.9132
66.16250.31320.86927.0264-3.96737.29090.14020.3306-0.1572-0.27940.1215-0.45830.1720.4654-0.24180.141-0.03520.02760.1866-0.0920.198544.3832-4.543511.3326
73.7572-0.3592-0.21090.0606-0.10430.5822-0.08-0.0792-0.01910.03050.0614-0.0393-0.00730.09580.01010.1747-0.0305-0.01120.1532-0.030.180823.7747-4.36915.8365
88.39196.6931-7.40717.359-6.28599.76840.1941-0.3209-0.59210.1768-0.3719-0.3916-0.08990.49160.16110.1407-0.0476-0.00910.1947-0.02750.188127.1871-8.970613.7463
90.235-0.8454-0.06882.9303-0.27542.4614-0.1421-0.0644-0.2096-0.19460.080.3172-0.0522-0.21830.04970.108-0.02860.01910.13040.02160.16763.1867-13.835614.3364
102.2562.4723-3.58473.5302-4.81056.7137-0.29890.366-0.14-0.76910.18870.54740.1736-0.14030.06240.1807-0.0178-0.01510.2838-0.06630.27630.4864-20.22286.1431
113.62690.1502-1.16898.0434-0.04952.4657-0.11230.64760.3289-0.52230.1042-0.1544-0.00810.22630.00330.1675-0.0415-0.04510.23510.04330.093417.85791.01434.0525
122.18871.0923-1.90314.6443-2.10517.9796-0.02420.1534-0.2598-0.1294-0.0236-0.05680.33560.12390.05810.14220.0031-0.01780.1237-0.06140.152713.2593-20.90279.0219
133.8163-0.2394.65333.4066-1.30426.01420.1440.7953-0.32820.3415-0.35110.46030.5525-0.25090.0410.252-0.03680.01880.24220.00890.140811.9646-1.6584-2.1032
146.1899-6.0488-0.55396.00840.89322.0361-0.45-1.05190.44950.32940.6922-0.1435-0.3951-0.3164-0.20420.28360.0013-0.04760.30850.01110.213711.63476.91110.4859
158.59066.8027-5.16115.8066-5.06526.1560.0814-0.1470.14040.1265-0.12610.46150.25040.07810.12590.1894-0.0381-0.00340.2279-0.05710.18276.6951-17.98048.0986
162.62571.2071-4.21638.8144-0.91957.4360.1543-0.3989-0.18670.3819-0.3647-0.87690.08470.41160.17530.1635-0.0931-0.03690.30880.06220.248431.264717.603710.0411
173.06651.90051.52562.0876-1.57757.8331.0653-2.6850.5376-0.3278-0.93520.4813-0.12332.2197-0.36130.5818-0.08990.14480.7959-0.090.512127.695524.484919.8763
185.5176-3.5163-0.36662.8324-1.6556.6985-0.0460.47841.0671-0.54920.1846-0.1879-0.48860.7472-0.15090.4338-0.19990.01050.1780.00750.35412.636331.336321.5469
192.55822.333-0.28574.0014-0.61181.2814-0.07190.13830.0643-0.17250.14630.0737-0.0366-0.0044-0.05570.11710.0042-0.01220.1348-0.00890.10161.08419.404916.5395
207.7563-0.1318-2.49056.16450.9824.14270.11970.44210.232-0.3486-0.2195-0.1487-0.38910.1990.07130.1837-0.0746-0.02820.28780.03320.134125.181622.19675.1127
212.57520.9986-1.59161.0578-0.61340.9429-0.05890.01340.0385-0.01210.0535-0.0478-0.01260.03130.00030.1791-0.0525-0.01650.2096-0.00880.128911.157413.244618.4259
229.5617.2201-7.39135.649-6.15397.30430.0439-0.26680.07580.2732-0.27220.0674-0.2494-0.1280.2220.1772-0.0611-0.02250.1716-0.01030.155211.521813.331911.7884
231.5106-2.0674-0.5243.2681.14953.73530.0715-0.1951-0.1267-0.01630.01820.23290.0645-0.3541-0.11830.1365-0.0440.00060.14430.01060.1368-5.91493.884622.5059
245.8731-2.30324.52635.6478-3.1624.31230.5998-0.0753-0.56380.0884-0.03561.68520.1807-1.182-0.50270.2205-0.1126-0.00150.5038-0.04660.3647-20.0382-1.042714.5945
254.07391.20081.80040.74771.49312.7940.078-0.13560.2447-0.0118-0.14470.1023-0.2427-0.09330.04280.16280.01290.0020.10160.01520.1461-0.527920.347421.7557
265.26752.31664.86333.44592.06834.5804-1.14111.39910.3921-1.76830.80030.358-0.95540.22760.2690.4322-0.0756-0.02150.35420.01730.27-2.481318.58526.9682
272.3750.30171.05366.8650.37791.43880.10530.09280.0819-0.1603-0.08190.06680.1246-0.0596-0.01570.1293-0.04290.00090.15390.00950.1037-6.29725.981710.5511
288.4527-3.62572.35167.0424-6.08848.49750.70270.9775-0.9661-0.652-1.13141.11511.94021.04170.4170.84180.32740.05530.8209-0.1320.7052-4.953725.779829.7472
295.4741.0391.93152.9842-1.60332.14170.2365-0.67130.65640.8155-0.38030.2945-0.1032-0.30730.14950.2206-0.00710.06140.2084-0.01990.1987-4.4520.509220.2078
304.9117-2.567-1.61387.53734.8933.21110.23340.2154-0.4732-0.0464-0.45040.72340.6508-0.37430.2510.2331-0.0546-0.04660.2703-0.00840.2621-13.4164-1.170212.5618
315.02831.4776-0.82743.5563-3.08763.46840.04020.4398-0.5023-0.4290.3181-1.12830.10780.52070.00090.242-0.08660.08090.1909-0.01760.337721.409231.83929.1625
328.53420.7735-4.41192.87861.33283.37720.4972-2.5219-0.21170.3918-1.5709-1.8673-1.22160.74991.18520.6341-0.0695-0.24610.85450.05030.835326.391726.497839.3554
333.8306-1.1348-2.89735.55760.49814.3916-0.1234-0.57950.34710.4068-0.0962-0.4126-0.29510.0340.09330.392-0.1454-0.16480.23140.00230.401418.193123.167453.1831
341.37940.09240.58492.28170.35272.6569-0.03260.00380.0194-0.13990.08070.0667-0.0312-0.1189-0.06530.1031-0.02980.03450.14120.00290.0878-2.39939.891241.2526
354.6134.4715-2.87124.4235-2.39276.53160.2459-0.32240.33150.2015-0.319-0.0853-0.4017-0.06870.11220.2365-0.0109-0.01780.1288-0.01850.226810.75427.672942.8004
365.52534.81013.97054.59644.85547.43350.04810.19671.094-0.0656-0.12880.195-0.64810.02910.08490.2357-0.00610.06370.1544-0.00910.331217.502140.298833.1127
371.06042.3327-0.68884.5856-1.42870.84590.0332-0.00850.0420.06940.0164-0.0519-0.02070.0217-0.04690.1189-0.016-0.0040.12990.01240.16979.426118.658938.0099
387.97577.17017.64416.58867.2458.2857-0.1780.29730.2876-0.14080.04230.75120.0311-0.0740.14510.1562-0.04140.00240.2169-0.01650.17475.81321.69737.1016
390.6125-0.81560.73111.362-0.68440.9405-0.1059-0.1748-0.1475-0.0230.07670.09870.2598-0.36930.05070.2085-0.1059-0.01020.22630.02570.1348-4.99192.641942.4247
405.022-5.425-3.37846.24833.56993.18540.3081-0.6362-0.82350.858-0.47740.93220.2064-1.46860.30150.308-0.1415-0.00350.56150.01530.2878-21.61641.770143.6205
416.1218-0.02410.5960.4319-0.91981.67760.1059-0.42220.03260.2395-0.1585-0.0284-0.0925-0.06860.05790.2456-0.06120.0090.1586-0.01340.12914.180213.658952.1154
426.01874.71785.73.78734.54735.43560.0499-0.89761.55330.395-0.62641.0715-0.3812-0.33710.4970.34980.01990.03260.3379-0.06830.3618-5.818723.553247.6515
432.53371.51761.4282.63412.25795.71670.1817-0.2680.16450.2292-0.11160.21130.0238-0.2955-0.03150.13790.00030.03460.1746-0.01760.1451-11.044513.080540.7366
443.2424-4.48092.39828.1959-2.09092.55710.947-0.0385-0.23870.6226-0.87430.4331-0.052-0.4565-0.03710.9408-0.08350.06340.72950.0040.38517.02338.820761.4123
453.59082.16522.80712.99071.45382.92880.3348-0.1266-0.0510.4477-0.23110.04030.0760.01470.34220.2746-0.0920.01450.31780.02030.1813-6.740810.494848.3629
464.04842.3035-0.26326.35230.48023.1832-0.55070.84620.384-0.64070.4342-0.2594-0.96560.6906-0.01770.4447-0.3205-0.03260.20880.07070.235529.009621.032251.6613
474.60222.15110.82973.50694.3668.5886-1.39430.0636-1.5827-0.81990.294-2.5267-0.36210.16760.95990.6814-0.26810.17840.849-0.01470.949536.538611.819347.8504
482.7674-4.1143.11399.0851-5.35844.104-0.0505-0.91140.30920.5249-0.0203-0.814-0.18870.54450.18430.2281-0.0686-0.06840.5544-0.08570.403336.8487-3.225554.6027
491.6955-0.9149-0.14090.6569-0.34960.921-0.0534-0.07960.0463-0.0491-0.0310.09030.0607-0.11370.08730.1851-0.058-0.00850.1160.03120.07898.6088-8.179350.5931
504.72986.27753.05388.76743.028.1390.2-0.5291-0.24130.3998-0.2794-0.36790.05180.07940.01320.2046-0.0037-0.03630.1691-0.00480.178825.57974.071457.8002
512.0192-0.77261.24446.7689-3.20311.9165-0.2152-0.42490.61091.0134-0.0651-0.0093-0.45020.3470.18190.3684-0.155-0.02370.2748-0.0250.229530.565321.063561.6785
520.44850.53490.39781.39180.42640.5163-0.00180.0270.0742-0.0310.019-0.0267-0.08180.0967-0.0220.2303-0.08460.01980.21640.00530.161120.13763.262350.4401
536.40824.56356.30946.24741.85969.0756-0.0286-0.50410.62130.1497-0.15330.1467-0.1513-0.06460.210.1619-0.0659-0.00570.1923-0.01240.129417.81764.439454.4711
540.4769-1.1513-0.24764.7715-0.65091.0670.0297-0.0621-0.13440.3537-0.00980.19770.3557-0.3081-0.03820.2244-0.0846-0.0130.1974-0.01720.14956.2126-13.392647.0911
551.8385-1.6264-1.26262.33981.07210.8818-0.3546-0.107-0.75040.63190.07620.56371.9643-2.17380.16890.447-0.18440.0590.4503-0.02210.3432-6.5506-20.269955.7502
565.53112.633-3.56232.7308-0.74492.8408-0.0872-0.0917-0.15740.03370.1253-0.16390.15710.1447-0.04410.1794-0.0101-0.03980.12420.00690.110722.1648-12.059753.7888
575.9094-6.0386-6.74597.05226.3988.13070.1113-1.1722-0.1020.3685-0.04140.07780.36610.2018-0.07490.248-0.0023-0.02670.28530.04740.138514.9343-6.490865.4457
586.5161-1.26520.95690.9821-0.61221.18610.035-0.0118-0.35350.07190.07180.17740.0583-0.1212-0.11660.1805-0.0681-0.00310.13520.00770.10783.9063-8.341857.9589
594.6333-5.2655-4.74856.02125.42244.89330.24860.26390.122-0.11430.1657-0.18540.1199-0.1286-0.42760.44440.0620.01770.38390.03360.471528.6215-20.502851.8812
608.4304-0.888-0.34131.1365-0.56962.50540.1158-0.0003-0.40140.01460.04630.21790.1912-0.1281-0.13030.2016-0.05850.00310.10330.00220.14318.8682-13.994356.1749
613.19851.13473.4847.6433-0.20856.8846-0.003-0.071.27590.4023-0.1786-0.1097-0.3030.06520.24150.2463-0.1048-0.06180.23480.00110.377743.58910.079646.0333
625.41645.68365.68055.98935.99066.011-1.67480.97280.0647-0.90961.65210.0847-0.57542.82480.00240.6238-0.20580.02311.01130.09550.587644.54250.456833.6654
636.3519-6.3072-6.17136.39876.0046.2262-0.1766-0.151-0.1946-0.20710.2459-0.81860.00481.3201-0.20650.2253-0.01780.01250.54560.03470.338243.3927-12.69823.7859
642.69160.071-0.38471.0154-0.38271.54260.0788-0.0949-0.06130.0537-0.04710.0060.1106-0.0547-0.04010.2037-0.0291-0.01320.093-0.01230.132118.095-21.222534.0625
654.00125.77721.02058.52121.61032.1489-0.04720.3004-0.4554-0.0480.1605-0.36690.230.36940.01940.22160.0011-0.05440.22440.00440.206940.1137-14.621536.7234
668.40151.4992-5.89374.54622.796610.0010.1325-0.9993-0.53860.5936-0.2049-1.08480.61570.55290.13340.3169-0.0539-0.17130.22080.05870.364950.2897-7.122648.4642
673.78881.41841.60970.55071.03081.4370.0803-0.03940.00530.042-0.0312-0.102-0.00980.0104-0.04430.2165-0.0434-0.02240.15730.03310.175430.2869-11.350436.584
684.9512-0.23411.23373.34731.69391.28390.0437-0.2372-0.23020.1855-0.03140.00540.35120.17120.01430.124-0.0597-0.00890.17850.06060.158631.021-14.586740.0735
690.4473-0.7596-0.36631.868-0.82483.64140.02790.0911-0.117-0.04160.07970.42780.4152-0.3939-0.10090.1803-0.0669-0.00520.22710.00480.178110.5812-24.408930.8873
707.76841.9444-2.99820.4982-0.72921.1742-0.2898-0.1061-0.5626-0.2771-0.0639-0.16470.9546-0.65050.3060.4015-0.14840.01960.2630.01190.44739.5308-35.963432.648
715.71223.1966-2.32376.2095-4.40495.62850.0024-0.0073-0.39670.0752-0.1892-0.29660.1590.30010.20850.18170.0221-0.01360.1624-0.06610.144231.3865-22.646627.2648
726.8602-1.1156-3.69543.0211.11473.6869-0.1895-0.3135-0.46180.39130.1230.02710.28950.14990.06950.2479-0.0347-0.02640.15270.02570.193117.5181-28.690939.3832
735.9239-6.26984.44699.3022-6.25224.2102-2.0867-0.49460.4191.4286-0.18110.40110.1294-2.95811.96941.3961-0.1536-0.00061.2464-0.29590.610628.2712-23.937715.6417
741.98210.54860.35072.0702-0.85060.5606-0.24812.14650.1362-2.09830.63231.30561.0338-1.4885-0.40060.9322-0.3217-0.2221.2411-0.01030.676733.3486-21.694414.7417
754.51493.3724-5.35014.0929-3.54117.6431-0.16060.3356-0.05770.09520.21960.13640.4484-0.2561-0.02030.2389-0.0345-0.02060.169-0.02270.223516.5503-29.95833.4142
762.92963.01383.37723.54413.51433.8991-0.06740.12240.4777-0.2627-0.02621.1161-0.249-0.04730.13180.2194-0.038-0.02520.227-0.04150.4041-47.0328-62.788517.2466
773.16955.50833.84699.74166.88154.90320.9456-1.912-0.3701-0.0041-1.2138-0.23291.0148-0.81260.22740.5516-0.10720.10870.710.05640.5767-47.841-63.233129.7672
784.3774-4.83934.23035.3674-4.68594.1806-0.27650.208-1.0756-0.28060.13320.36481.0462-0.5050.03740.5229-0.12970.10490.3399-0.00410.4519-35.2575-66.693639.7876
791.8282-0.2893-0.5360.6333-0.9392.46070.00330.08990.0226-0.190.0317-0.1678-0.06440.167-0.02490.0986-0.0165-0.02440.1180.00130.1698-17.9959-46.001129.3487
809.12286.1897-0.91754.2897-0.89483.43930.0047-0.1122-0.3689-0.1502-0.1927-0.02450.3869-0.12130.21930.2508-0.04890.00110.154-0.03280.2762-31.3921-63.481426.907
818.44752.3675-0.00659.2248-6.21324.5239-0.30830.6826-1.0549-0.68590.1475-0.36170.87650.11370.1530.2206-0.0203-0.00570.1993-0.1040.3589-42.7281-71.66715.1685
821.68932.74812.12973.51882.18032.0426-0.02840.1201-0.1664-0.01150.1368-0.03450.05440.0645-0.08410.1271-0.02910.02250.1716-0.03150.2304-31.7388-54.269226.703
839.61634.0682-2.54355.4538-3.18594.7727-0.09420.5899-0.4563-0.01370.131-0.09620.00840.0159-0.04510.1431-0.0452-0.00540.1775-0.03610.2379-28.9183-56.185223.3548
840.6423-0.7562-0.38681.49830.36915.6804-0.021-0.22870.18680.04750.0275-0.3013-0.0360.3432-0.02090.2042-0.0597-0.03740.1328-0.01140.2611-14.5576-40.86732.9092
854.65215.4684-5.29646.4688-6.27396.11680.3359-0.4586-0.27810.3547-0.5499-1.5534-0.04681.3930.25990.2964-0.0882-0.00690.6388-0.00430.48261.18-40.340229.2673
868.91940.064-1.40230.17360.5121.78270.0087-0.13090.14220.0496-0.00050.19460.15960.09110.00540.2419-0.0253-0.0420.11910.02230.2007-22.5997-56.763439.2355
874.79372.9201-3.50919.0525-7.31448.6386-0.08230.2036-0.4158-0.462-0.092-0.45680.51630.15740.15120.15980.00250.00010.2065-0.0720.2359-13.0996-51.226621.9415
885.00173.2525-1.41947.2944-2.36133.53040.00730.0302-0.64070.0203-0.1434-0.83830.09180.52220.15570.14740.0168-0.04210.2241-0.04170.2757-10.1239-52.266630.0348
892.4547-3.52172.64647.4718-0.82396.5822-0.4585-0.14731.41180.2604-0.6234-0.2991-1.0852-0.87831.03140.97750.1607-0.36470.8051-0.11120.7272-21.4109-57.157749.658
904.86383.2642-2.37364.6669-2.95926.75090.2601-0.3119-0.11740.197-0.2824-0.2308-0.06780.56620.01290.1450.0039-0.03040.1626-0.02140.3002-11.2158-49.235331.6582
916.47444.3701-0.79947.52022.0846.0698-0.11960.6723-0.1527-0.38850.34820.78710.6534-0.8683-0.13790.2963-0.141-0.09280.24440.06250.2809-45.891-64.389243.3144
924.83124.6475-0.03844.70351.36599.197-0.6765-1.70351.3609-0.2083-0.61952.25360.98480.43391.14310.5072-0.07120.02910.85480.08290.8963-53.4483-55.191546.8848
933.35594.62520.67246.46650.79371.85390.1757-0.8441-0.42010.6502-0.44570.56340.4698-0.50490.25990.3379-0.03470.14210.47060.16630.5038-50.329-45.04259.4098
941.4631-0.8036-0.38910.5310.44951.07180.0244-0.1684-0.15470.0473-0.0193-0.19040.06270.0626-0.01850.1729-0.0623-0.04180.16520.00440.1348-24.818-36.816649.4081
954.80536.6859-2.85089.65-2.48028.27220.393-0.7361-0.11220.6345-0.32020.44870.38970.0256-0.08650.2776-0.04780.00240.22880.05870.2649-40.2212-52.988555.4643
969.1346-0.0201-4.27897.63770.93722.14780.0047-0.491-0.5780.62140.0326-0.45220.28640.1379-0.03810.3388-0.0839-0.16030.26950.11550.3163-42.6777-68.402751.3451
971.45562.7122-0.4566.9519-0.69810.77720.0518-0.113-0.0779-0.0297-0.06960.04320.1024-0.05080.0140.1525-0.0448-0.05110.1630.02540.1988-36.367-45.984347.3918
985.46645.3614-5.26126.7953-3.20577.52490.0398-0.0758-0.36490.08850.1088-0.29520.18380.2494-0.17340.1724-0.0502-0.0220.17430.03520.2897-33.0594-50.210849.5871
991.9139-2.3288-0.23613.02720.61281.57570.0015-0.21560.19620.1201-0.1061-0.1137-0.24330.24450.14090.1753-0.08750.00950.20470.00940.1442-23.0174-30.089748.0721
1005.579-3.93951.02133.4715-0.75056.8989-0.0077-0.57610.45981.0225-0.0931-1.3659-1.05771.6291-0.07670.3539-0.1741-0.15240.3838-0.07940.6277-7.447-27.2154.5543
1015.9111-0.50273.16140.7850.45112.3740.07360.09930.03120.19140.0380.0687-0.00840.02-0.10330.2392-0.08010.00810.1802-0.00820.1667-33.3675-33.718856.1683
1022.2453-2.2461-2.43093.99261.17865.3987-0.3787-1.0034-0.32510.58490.3240.4380.1818-0.2819-0.01850.3802-0.07570.07210.34290.01220.2073-40.6203-41.525263.0601
1038.63530.5249-3.4991.3709-0.11035.45370.1364-0.7681-0.09650.3612-0.147-0.11010.18860.24780.02670.2393-0.0619-0.06730.22210.02930.1839-18.9377-40.480555.5658
1047.7574-3.39354.014.3249-4.42854.60850.24080.681-0.41050.34870.3922-0.55962.32261.2784-0.60950.90630.1009-0.03720.6779-0.21040.5967-41.9934-27.845562.449
1058.40931.8508-4.25022.8046-0.76794.83330.3506-0.41460.30750.2733-0.2654-0.0671-0.15020.2047-0.06140.2277-0.0619-0.0510.187-0.00210.1424-22.5129-34.035956.7925
1066.1693.0571-0.64116.5322-1.67686.266-0.27640.4548-1.0244-0.40920.0265-0.3570.7534-0.12580.2090.3321-0.19260.07480.2845-0.04140.3809-59.7178-44.595652.9413
1077.59634.9079-3.38874.8137-0.27193.7412-1.5672-0.16310.4253-1.46971.88491.86231.6557-0.9525-0.46430.6535-0.22790.01450.94930.08460.6908-64.6649-39.273542.822
1086.5319-2.7358-1.04232.14791.60789.2512-0.3694-1.06650.2851-0.08110.55850.84470.0836-0.668-0.13190.2272-0.1336-0.01320.5920.03140.3156-65.3762-22.965940.1464
1095.1832-2.64825.47094.4377-2.18487.03460.3069-1.0722-0.08650.0031-0.24660.31040.3341-1.4643-0.08990.17-0.05310.02650.3983-0.02110.1981-60.5076-19.717646.8315
1101.9821-0.52480.36571.3197-0.67313.5976-0.0878-0.0808-0.0795-0.0793-0.0178-0.02870.10310.1710.1070.1553-0.05020.01210.1062-0.0320.1212-33.9901-17.943644.1898
1118.49965.7581-2.82217.6771-1.9767.534-0.1217-0.29610.16860.11240.07540.44110.0198-0.43830.05620.1701-0.01550.02820.2477-0.010.1555-58.2828-27.046750.8581
1127.3578-1.44882.38939.316-4.5066.8399-0.1019-0.5893-0.53591.0892-0.08110.4254-0.1325-0.44930.16770.3732-0.12440.08170.291-0.02450.2224-64.6268-39.813360.3622
1131.2570.4778-0.43860.9171-0.35611.30940.0145-0.02110.01040.0364-0.02180.03690.0699-0.03180.00490.1786-0.07840.00840.1855-0.02540.1335-45.9311-25.972145.3137
1144.253.29563.70073.43612.53153.3511-0.2497-0.48761.4462-0.35250.0482-0.8125-1.3230.833-0.05890.3974-0.1555-0.0580.2358-0.01540.4342-24.1038-3.508748.3702
1156.35984.09583.76553.46692.40253.8698-0.09630.2590.1660.0030.10390.1208-0.1375-0.2159-0.00880.1413-00.00490.16470.02260.1079-50.864-14.318440.4391
1167.2296-2.12651.23711.9001-0.31422.95440.007-0.3186-0.02970.15420.1137-0.0197-0.0548-0.1282-0.12320.1962-0.0488-0.01110.1262-0.01870.1331-36.4481-15.969654.1785
1173.45330.60344.18512.95220.9855.3083-0.2234-0.10370.6709-0.0198-0.01870.1215-0.1527-0.18210.28020.1744-0.02870.02110.11170.03470.1559-41.7717-9.15750.0333
1185.27666.50865.73659.99947.50796.41290.27331.1999-0.48971.56791.9269-0.81290.52792.6097-2.17470.78630.22380.11190.8726-0.07450.7079-53.7298-8.593232.3205
1190.1541-0.55370.32834.72860.44042.427-0.23381.32570.0753-0.42740.42080.3942-0.1662-0.4705-0.10520.2153-0.0653-0.03490.51260.09250.164-50.5432-10.31541.045
1208.48972.00324.40457.52330.9924.1048-0.13950.13540.12160.55110.0258-0.53760.22790.8701-0.02640.2567-0.0962-0.01190.31250.0180.1581-26.1155-9.604850.1564
1213.196-1.4407-3.57488.1288-2.2076.14410.2539-0.8091-0.94080.0627-0.41260.11720.5287-0.23530.1760.1925-0.1096-0.00510.31830.05170.4093-69.3364-31.892431.9021
1226.06033.1645-3.89654.6684-4.13674.37770.0555-0.45080.09720.525-0.17890.81060.4134-1.12180.24010.373-0.1568-0.01420.4366-0.14630.3758-60.7669-33.706515.1896
1237.5878-3.0408-2.1146.11255.78565.60280.43830.785-1.1935-0.2346-1.13331.320.5326-1.24170.64490.3696-0.0517-0.11430.5158-0.07320.345-60.5964-27.85576.1695
1240.30350.26790.66820.84680.4981.16290.0182-0.14990.14680.0305-0.0271-0.0143-0.0331-0.047-0.00580.2026-0.04480.00820.20340.02230.1422-37.8694-15.461522.5226
1254.17974.3583-2.73084.6168-3.33186.0679-0.16750.45230.2256-0.20590.1710.4163-0.0128-0.3514-0.00210.14070.0053-0.00120.2206-0.04060.2264-61.3607-22.521219.4216
1269.08794.5932.34593.076-1.19689.39650.16890.07330.87120.10020.05770.8155-0.2967-0.9135-0.23670.18890.02280.04190.23610.02430.3476-75.6705-24.033228.9372
1276.59420.8115-1.9098-0.1786-0.14290.77850.1203-0.14590.08530.0222-0.03490.05070.0247-0.0444-0.08210.1871-0.04690.01510.1316-0.00230.1861-52.4636-24.420724.3569
1284.62613.44685.66075.22743.68867.04650.1424-0.22560.03220.0656-0.01790.0042-0.1513-0.2339-0.11730.1506-0.05590.02480.17010.00240.1749-54.0441-20.020325.1825
1290.3393-0.8572-0.22862.03440.50311.7480.20630.1530.3448-0.1152-0.0458-0.1956-0.39250.1615-0.0870.1739-0.0650.02850.20430.00790.1565-32.3696-16.609420.1816
1305.4197-3.25433.25413.0814-0.77543.2164-0.34221.07591.0686-0.6339-0.1969-1.6095-1.20441.03170.52750.4222-0.14220.06680.36010.00810.3772-25.6856-0.965718.7382
1310.74290.4444-0.88074.5008-0.11191.1278-0.02680.2536-0.0927-0.219-0.02460.1003-0.0548-0.19110.05840.1718-0.027-0.02640.23160.00210.1108-45.754-21.491210.3109
1324.22155.10734.90366.21725.94055.7045-0.15320.70630.9945-0.2447-0.08911.2186-0.6991-0.32810.18240.34140.03880.00010.35680.02440.4164-51.624-8.617514.5522
1334.55981.11932.92841.5909-0.4945.1374-0.04350.0850.20340.00160.07770.0378-0.24570.0193-0.03520.1606-0.01620.02210.08290.01110.1494-39.8896-6.877822.3542
1348.1878-4.74210.46814.00711.66186.4817-0.39160.2187-0.34991.16450.9731-0.5184-1.36340.9218-0.46450.7531-0.05710.08380.79360.05820.482-42.4618-25.07991.3396
1358.86546.94414.60119.03925.40895.4286-0.04780.4273-0.2892-0.30770.298-0.3053-0.2549-0.0965-0.25930.2067-0.06130.02270.27980.04310.1783-39.0673-12.285614.0703
1362.0532-0.94113.50066.36-3.26396.7420.3112-1.0896-0.08670.3179-0.15480.3030.2031-0.8108-0.140.2001-0.14330.00610.345-0.00730.2351-61.4867-41.926110.9999
1372.6905-3.4523.60854.4276-4.44865.9367-0.59760.1966-2.5347-0.4891-0.29520.1249-1.1801-0.49370.79710.6151-0.1451-0.05310.8137-0.02440.8916-55.5292-52.180815.1278
1385.2607-5.0221-4.27344.85634.12544.3348-0.26771.0819-1.0547-0.3614-0.31110.35850.4142-1.03730.58490.467-0.1735-0.08040.3024-0.08110.4483-41.2604-57.97968.4094
1390.5199-0.1825-0.45752.0185-0.68210.8069-0.08490.092-0.0084-0.08310.0545-0.0034-0.07220.05170.05480.1322-0.04590.0460.1416-0.02240.1219-26.8223-33.263312.2492
1402.64582.76144.34023.15284.83837.4136-0.21420.6956-0.3411-0.48780.1325-0.1594-0.2843-0.00280.00040.2334-0.0441-0.03440.2488-0.00870.2725-40.8032-42.49885.3501
1414.6644-5.13432.11816.4221-1.38166.75650.43720.4221-0.4817-0.252-0.26320.20710.2905-0.5216-0.17610.2192-0.1031-0.02360.2847-0.00250.192-58.4668-46.37482.4446
1428.4794-4.86373.86663.9998-3.45823.03250.08450.70580.3617-0.6047-0.10170.2805-0.06190.58880.02870.2385-0.1121-0.01980.28910.02970.171-57.2418-38.59392.7993
1432.30880.28291.5740.41980.4151.08750.0494-0.1168-0.18870.00110.00230.00760.1213-0.185-0.05550.1912-0.08440.00210.22070.02060.1837-39.8496-40.210913.4377
1445.46535.5315.48635.59695.49236.9337-0.16130.38650.2343-0.14420.22180.5499-0.23-0.0752-0.02970.1917-0.07030.00310.2297-0.00750.1915-41.8323-37.51998.3175
1451.87891.21750.35883.694-0.08290.5742-0.04210.1431-0.1857-0.2238-0.0113-0.36310.01680.14080.06270.1622-0.03650.01780.1836-0.01920.1637-22.938-38.960211.0685
1464.40875.344-4.8016.4741-5.8265.2513-0.54151.4028-0.365-1.04790.99890.10740.5522-0.3621-0.3740.4086-0.0583-0.0080.3992-0.0440.2694-30.4896-39.0007-2.6008
1472.25311.6862-0.3728.86662.95563.1955-0.01480.1633-0.111-0.11620.08-0.2243-0.12790.0166-0.07570.1522-0.0370.01320.17470.0080.0758-24.8301-29.07824.837
1489.4819-5.82690.4824.0216-1.30362.40630.4070.23930.23980.38590.5787-0.5318-1.4187-0.2689-0.91450.75050.1368-0.03690.6134-0.20340.8836-21.5259-55.654611.9187
1495.77273.2109-1.90261.7878-1.01544.40430.3207-0.4851-0.90870.252-0.6242-0.72360.41350.15670.26760.2108-0.0116-0.04870.2053-0.02570.327-24.682-46.47916.6622
1505.90982.36843.8677.9958-3.40869.7355-0.0345-0.30250.44350.6101-0.181-0.2246-0.5137-0.06990.18950.1878-0.05410.05390.2453-0.03250.2157-16.7951-22.85287.3545
精密化 TLSグループ
IDRefine-IDRefine TLS-IDSelection details
1X-RAY DIFFRACTION1(CHAIN A AND RESID 1:12)
2X-RAY DIFFRACTION2(CHAIN A AND RESID 13:17)
3X-RAY DIFFRACTION3(CHAIN A AND RESID 18:25)
4X-RAY DIFFRACTION4(CHAIN A AND RESID 26:52)
5X-RAY DIFFRACTION5(CHAIN A AND RESID 53:59)
6X-RAY DIFFRACTION6(CHAIN A AND RESID 60:76)
7X-RAY DIFFRACTION7(CHAIN A AND RESID 77:112)
8X-RAY DIFFRACTION8(CHAIN A AND RESID 113:117)
9X-RAY DIFFRACTION9(CHAIN A AND RESID 118:132)
10X-RAY DIFFRACTION10(CHAIN A AND RESID 133:139)
11X-RAY DIFFRACTION11(CHAIN A AND RESID 140:155)
12X-RAY DIFFRACTION12(CHAIN A AND RESID 156:180)
13X-RAY DIFFRACTION13(CHAIN A AND RESID 181:185)
14X-RAY DIFFRACTION14(CHAIN A AND RESID 186:194)
15X-RAY DIFFRACTION15(CHAIN A AND RESID 195:205)
16X-RAY DIFFRACTION16(CHAIN B AND RESID 1:12)
17X-RAY DIFFRACTION17(CHAIN B AND RESID 13:17)
18X-RAY DIFFRACTION18(CHAIN B AND RESID 18:25)
19X-RAY DIFFRACTION19(CHAIN B AND RESID 26:60)
20X-RAY DIFFRACTION20(CHAIN B AND RESID 61:77)
21X-RAY DIFFRACTION21(CHAIN B AND RESID 78:112)
22X-RAY DIFFRACTION22(CHAIN B AND RESID 113:117)
23X-RAY DIFFRACTION23(CHAIN B AND RESID 118:129)
24X-RAY DIFFRACTION24(CHAIN B AND RESID 130:135)
25X-RAY DIFFRACTION25(CHAIN B AND RESID 136:154)
26X-RAY DIFFRACTION26(CHAIN B AND RESID 155:160)
27X-RAY DIFFRACTION27(CHAIN B AND RESID 161:183)
28X-RAY DIFFRACTION28(CHAIN B AND RESID 184:190)
29X-RAY DIFFRACTION29(CHAIN B AND RESID 191:200)
30X-RAY DIFFRACTION30(CHAIN B AND RESID 201:205)
31X-RAY DIFFRACTION31(CHAIN C AND RESID 1:12)
32X-RAY DIFFRACTION32(CHAIN C AND RESID 13:17)
33X-RAY DIFFRACTION33(CHAIN C AND RESID 18:24)
34X-RAY DIFFRACTION34(CHAIN C AND RESID 25:54)
35X-RAY DIFFRACTION35(CHAIN C AND RESID 55:64)
36X-RAY DIFFRACTION36(CHAIN C AND RESID 65:72)
37X-RAY DIFFRACTION37(CHAIN C AND RESID 73:112)
38X-RAY DIFFRACTION38(CHAIN C AND RESID 113:117)
39X-RAY DIFFRACTION39(CHAIN C AND RESID 118:129)
40X-RAY DIFFRACTION40(CHAIN C AND RESID 130:135)
41X-RAY DIFFRACTION41(CHAIN C AND RESID 136:154)
42X-RAY DIFFRACTION42(CHAIN C AND RESID 155:160)
43X-RAY DIFFRACTION43(CHAIN C AND RESID 161:183)
44X-RAY DIFFRACTION44(CHAIN C AND RESID 184:190)
45X-RAY DIFFRACTION45(CHAIN C AND RESID 191:205)
46X-RAY DIFFRACTION46(CHAIN D AND RESID 1:12)
47X-RAY DIFFRACTION47(CHAIN D AND RESID 13:17)
48X-RAY DIFFRACTION48(CHAIN D AND RESID 18:25)
49X-RAY DIFFRACTION49(CHAIN D AND RESID 26:53)
50X-RAY DIFFRACTION50(CHAIN D AND RESID 54:64)
51X-RAY DIFFRACTION51(CHAIN D AND RESID 65:72)
52X-RAY DIFFRACTION52(CHAIN D AND RESID 73:112)
53X-RAY DIFFRACTION53(CHAIN D AND RESID 113:117)
54X-RAY DIFFRACTION54(CHAIN D AND RESID 118:129)
55X-RAY DIFFRACTION55(CHAIN D AND RESID 130:135)
56X-RAY DIFFRACTION56(CHAIN D AND RESID 136:154)
57X-RAY DIFFRACTION57(CHAIN D AND RESID 155:160)
58X-RAY DIFFRACTION58(CHAIN D AND RESID 161:183)
59X-RAY DIFFRACTION59(CHAIN D AND RESID 184:191)
60X-RAY DIFFRACTION60(CHAIN D AND RESID 192:205)
61X-RAY DIFFRACTION61(CHAIN E AND RESID 1:12)
62X-RAY DIFFRACTION62(CHAIN E AND RESID 13:17)
63X-RAY DIFFRACTION63(CHAIN E AND RESID 18:25)
64X-RAY DIFFRACTION64(CHAIN E AND RESID 26:54)
65X-RAY DIFFRACTION65(CHAIN E AND RESID 55:64)
66X-RAY DIFFRACTION66(CHAIN E AND RESID 65:72)
67X-RAY DIFFRACTION67(CHAIN E AND RESID 73:112)
68X-RAY DIFFRACTION68(CHAIN E AND RESID 113:117)
69X-RAY DIFFRACTION69(CHAIN E AND RESID 118:132)
70X-RAY DIFFRACTION70(CHAIN E AND RESID 133:138)
71X-RAY DIFFRACTION71(CHAIN E AND RESID 139:160)
72X-RAY DIFFRACTION72(CHAIN E AND RESID 161:182)
73X-RAY DIFFRACTION73(CHAIN E AND RESID 183:188)
74X-RAY DIFFRACTION74(CHAIN E AND RESID 189:193)
75X-RAY DIFFRACTION75(CHAIN E AND RESID 194:205)
76X-RAY DIFFRACTION76(CHAIN F AND RESID 1:12)
77X-RAY DIFFRACTION77(CHAIN F AND RESID 13:17)
78X-RAY DIFFRACTION78(CHAIN F AND RESID 18:25)
79X-RAY DIFFRACTION79(CHAIN F AND RESID 26:53)
80X-RAY DIFFRACTION80(CHAIN F AND RESID 54:64)
81X-RAY DIFFRACTION81(CHAIN F AND RESID 65:72)
82X-RAY DIFFRACTION82(CHAIN F AND RESID 73:112)
83X-RAY DIFFRACTION83(CHAIN F AND RESID 113:117)
84X-RAY DIFFRACTION84(CHAIN F AND RESID 118:130)
85X-RAY DIFFRACTION85(CHAIN F AND RESID 131:136)
86X-RAY DIFFRACTION86(CHAIN F AND RESID 137:154)
87X-RAY DIFFRACTION87(CHAIN F AND RESID 155:171)
88X-RAY DIFFRACTION88(CHAIN F AND RESID 172:183)
89X-RAY DIFFRACTION89(CHAIN F AND RESID 184:191)
90X-RAY DIFFRACTION90(CHAIN F AND RESID 192:205)
91X-RAY DIFFRACTION91(CHAIN G AND RESID 1:12)
92X-RAY DIFFRACTION92(CHAIN G AND RESID 13:17)
93X-RAY DIFFRACTION93(CHAIN G AND RESID 18:25)
94X-RAY DIFFRACTION94(CHAIN G AND RESID 26:54)
95X-RAY DIFFRACTION95(CHAIN G AND RESID 55:64)
96X-RAY DIFFRACTION96(CHAIN G AND RESID 65:75)
97X-RAY DIFFRACTION97(CHAIN G AND RESID 76:112)
98X-RAY DIFFRACTION98(CHAIN G AND RESID 113:117)
99X-RAY DIFFRACTION99(CHAIN G AND RESID 118:129)
100X-RAY DIFFRACTION100(CHAIN G AND RESID 130:135)
101X-RAY DIFFRACTION101(CHAIN G AND RESID 136:149)
102X-RAY DIFFRACTION102(CHAIN G AND RESID 150:155)
103X-RAY DIFFRACTION103(CHAIN G AND RESID 156:183)
104X-RAY DIFFRACTION104(CHAIN G AND RESID 184:191)
105X-RAY DIFFRACTION105(CHAIN G AND RESID 192:205)
106X-RAY DIFFRACTION106(CHAIN H AND RESID 1:12)
107X-RAY DIFFRACTION107(CHAIN H AND RESID 13:17)
108X-RAY DIFFRACTION108(CHAIN H AND RESID 18:24)
109X-RAY DIFFRACTION109(CHAIN H AND RESID 25:30)
110X-RAY DIFFRACTION110(CHAIN H AND RESID 31:54)
111X-RAY DIFFRACTION111(CHAIN H AND RESID 55:64)
112X-RAY DIFFRACTION112(CHAIN H AND RESID 65:72)
113X-RAY DIFFRACTION113(CHAIN H AND RESID 73:129)
114X-RAY DIFFRACTION114(CHAIN H AND RESID 130:135)
115X-RAY DIFFRACTION115(CHAIN H AND RESID 136:154)
116X-RAY DIFFRACTION116(CHAIN H AND RESID 155:172)
117X-RAY DIFFRACTION117(CHAIN H AND RESID 173:183)
118X-RAY DIFFRACTION118(CHAIN H AND RESID 184:189)
119X-RAY DIFFRACTION119(CHAIN H AND RESID 190:200)
120X-RAY DIFFRACTION120(CHAIN H AND RESID 201:205)
121X-RAY DIFFRACTION121(CHAIN I AND RESID 1:14)
122X-RAY DIFFRACTION122(CHAIN I AND RESID 15:22)
123X-RAY DIFFRACTION123(CHAIN I AND RESID 23:27)
124X-RAY DIFFRACTION124(CHAIN I AND RESID 28:54)
125X-RAY DIFFRACTION125(CHAIN I AND RESID 55:64)
126X-RAY DIFFRACTION126(CHAIN I AND RESID 65:72)
127X-RAY DIFFRACTION127(CHAIN I AND RESID 73:112)
128X-RAY DIFFRACTION128(CHAIN I AND RESID 113:117)
129X-RAY DIFFRACTION129(CHAIN I AND RESID 118:129)
130X-RAY DIFFRACTION130(CHAIN I AND RESID 130:135)
131X-RAY DIFFRACTION131(CHAIN I AND RESID 136:154)
132X-RAY DIFFRACTION132(CHAIN I AND RESID 155:160)
133X-RAY DIFFRACTION133(CHAIN I AND RESID 161:182)
134X-RAY DIFFRACTION134(CHAIN I AND RESID 183:190)
135X-RAY DIFFRACTION135(CHAIN I AND RESID 191:205)
136X-RAY DIFFRACTION136(CHAIN J AND RESID 1:12)
137X-RAY DIFFRACTION137(CHAIN J AND RESID 13:17)
138X-RAY DIFFRACTION138(CHAIN J AND RESID 18:25)
139X-RAY DIFFRACTION139(CHAIN J AND RESID 26:53)
140X-RAY DIFFRACTION140(CHAIN J AND RESID 54:60)
141X-RAY DIFFRACTION141(CHAIN J AND RESID 61:71)
142X-RAY DIFFRACTION142(CHAIN J AND RESID 72:76)
143X-RAY DIFFRACTION143(CHAIN J AND RESID 77:112)
144X-RAY DIFFRACTION144(CHAIN J AND RESID 113:117)
145X-RAY DIFFRACTION145(CHAIN J AND RESID 118:154)
146X-RAY DIFFRACTION146(CHAIN J AND RESID 155:160)
147X-RAY DIFFRACTION147(CHAIN J AND RESID 161:183)
148X-RAY DIFFRACTION148(CHAIN J AND RESID 184:190)
149X-RAY DIFFRACTION149(CHAIN J AND RESID 191:200)
150X-RAY DIFFRACTION150(CHAIN J AND RESID 201:205)

+
万見について

-
お知らせ

-
2022年2月9日: EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

  • EMDBのヘッダファイルのバージョン3が、公式のフォーマットとなりました。
  • これまでは公式だったバージョン1.9は、アーカイブから削除されます。

関連情報:EMDBヘッダ

外部リンク:wwPDBはEMDBデータモデルのバージョン3へ移行します

-
2020年8月12日: 新型コロナ情報

新型コロナ情報

URL: https://pdbj.org/emnavi/covid19.php

新ページ: EM Navigatorに新型コロナウイルスの特設ページを開設しました。

関連情報:Covid-19情報 / 2020年3月5日: 新型コロナウイルスの構造データ

+
2020年3月5日: 新型コロナウイルスの構造データ

新型コロナウイルスの構造データ

関連情報:万見生物種 / 2020年8月12日: 新型コロナ情報

外部リンク:COVID-19特集ページ - PDBj / 今月の分子2020年2月:コロナウイルスプロテーアーゼ

+
2019年1月31日: EMDBのIDの桁数の変更

EMDBのIDの桁数の変更

  • EMDBエントリに付与されているアクセスコード(EMDB-ID)は4桁の数字(例、EMD-1234)でしたが、間もなく枯渇します。これまでの4桁のID番号は4桁のまま変更されませんが、4桁の数字を使い切った後に発行されるIDは5桁以上の数字(例、EMD-12345)になります。5桁のIDは2019年の春頃から発行される見通しです。
  • EM Navigator/万見では、接頭語「EMD-」は省略されています。

関連情報:Q: 「EMD」とは何ですか? / 万見/EM NavigatorにおけるID/アクセスコードの表記

外部リンク:EMDB Accession Codes are Changing Soon! / PDBjへお問い合わせ

+
2017年7月12日: PDB大規模アップデート

PDB大規模アップデート

  • 新バージョンのPDBx/mmCIF辞書形式に基づくデータがリリースされました。
  • 今回の更新はバージョン番号が4から5になる大規模なもので、全エントリデータの書き換えが行われる「Remediation」というアップデートに該当します。
  • このバージョンアップで、電子顕微鏡の実験手法に関する多くの項目の書式が改定されました(例:em_softwareなど)。
  • EM NavigatorとYorodumiでも、この改定に基づいた表示内容になります。

外部リンク:wwPDB Remediation / OneDepデータ基準に準拠した、より強化された内容のモデル構造ファイルが、PDBアーカイブで公開されました。

-
万見 (Yorodumi)

幾万の構造データを、幾万の視点から

  • 万見(Yorodumi)は、EMDB/PDB/SASBDBなどの構造データを閲覧するためのページです。
  • EM Navigatorの詳細ページの後継、Omokage検索のフロントエンドも兼ねています。

関連情報:EMDB / PDB / SASBDB / 3つのデータバンクの比較 / 万見検索 / 2016年8月31日: 新しいEM Navigatorと万見 / 万見文献 / Jmol/JSmol / 機能・相同性情報 / 新しいEM Navigatorと万見の変更点

他の情報も見る