- PDB-2x8l: Plasmodium falciparum lactate dehydrogenase apo structure -
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Open data
ID or keywords:
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Basic information
Entry
Database: PDB / ID: 2x8l
Title
Plasmodium falciparum lactate dehydrogenase apo structure
Components
L-LACTATE DEHYDROGENASE
Keywords
OXIDOREDUCTASE / NAD / PYRUVATE / GLYCOLYSIS
Function / homology
Function and homology information
L-lactate dehydrogenase / lactate metabolic process / L-lactate dehydrogenase activity / pyruvate metabolic process / metal ion binding Similarity search - Function
Resolution: 1.6→62.5 Å / Cor.coef. Fo:Fc: 0.974 / Cor.coef. Fo:Fc free: 0.966 / SU B: 3.12 / SU ML: 0.047 / TLS residual ADP flag: LIKELY RESIDUAL / Cross valid method: THROUGHOUT / ESU R: 0.069 / ESU R Free: 0.073 / Stereochemistry target values: MAXIMUM LIKELIHOOD Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.U VALUES RESIDUAL ONLY. THE ACTIVE SITE LOOP IS DISORDERED (NOT OBSERVED) AND HAS BEEN OMITTED FROM THE MODEL ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.1674
2087
5 %
RANDOM
Rwork
0.1357
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obs
0.13726
39452
99.87 %
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Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.4 Å / Solvent model: BABINET MODEL WITH MASK