- PDB-2x6k: THE CRYSTAL STRUCTURE OF THE DROSOPHILA CLASS III PI3-KINASE VPS3... -
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基本情報
登録情報
データベース: PDB / ID: 2x6k
タイトル
THE CRYSTAL STRUCTURE OF THE DROSOPHILA CLASS III PI3-KINASE VPS34 IN COMPLEX WITH PI-103
要素
PHOSPHOTIDYLINOSITOL 3 KINASE 59F
キーワード
TRANSFERASE / PI103 / PI-103 / AUTOPHAGY / PI3K CLASS III / PHOSPHOINOSITIDE 3-KINASE CLASS III
機能・相同性
機能・相同性情報
positive regulation of nurse cell apoptotic process / omegasome / Synthesis of PIPs at the Golgi membrane / Synthesis of PIPs at the early endosome membrane / Synthesis of PIPs at the late endosome membrane / RHO GTPases Activate NADPH Oxidases / larval midgut cell programmed cell death / Macroautophagy / phosphatidylinositol 3-kinase complex, class III / phosphatidylinositol 3-kinase complex, class III, type II ...positive regulation of nurse cell apoptotic process / omegasome / Synthesis of PIPs at the Golgi membrane / Synthesis of PIPs at the early endosome membrane / Synthesis of PIPs at the late endosome membrane / RHO GTPases Activate NADPH Oxidases / larval midgut cell programmed cell death / Macroautophagy / phosphatidylinositol 3-kinase complex, class III / phosphatidylinositol 3-kinase complex, class III, type II / dsRNA transport / phosphatidylinositol 3-kinase complex, class III, type I / epithelial structure maintenance / protein targeting to lysosome / phagophore assembly site / phosphatidylinositol 3-kinase / phosphatidylinositol-3-phosphate biosynthetic process / regulation of early endosome to late endosome transport / neuron remodeling / establishment or maintenance of cell polarity / 1-phosphatidylinositol-3-kinase activity / phosphatidylinositol-mediated signaling / autophagosome membrane / phosphatidylinositol phosphate biosynthetic process / autophagosome assembly / cellular response to starvation / regulation of autophagy / autophagy / endocytosis / peroxisome / early endosome / endosome / phosphorylation / ATP binding / membrane / cytoplasm 類似検索 - 分子機能
ENGINEERED RESIDUE IN CHAIN A, GLY 455 TO ALA ENGINEERED RESIDUE IN CHAIN B, GLY 455 TO ALA
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実験情報
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実験
実験
手法: X線回折 / 使用した結晶の数: 1
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試料調製
結晶
マシュー密度: 4.17 Å3/Da / 溶媒含有率: 70.25 % / 解説: NONE
結晶化
pH: 7.5 詳細: PROTEIN WAS CRYSTALLISED IN 0.88M AMMONIUM SULPHATE, 100MM DI-POTASSIUM HYDROGEN PHOSPHATE AND 100MM DI-SODIUM HYDROGEN PHOSPHATE (TITRATED TO PH 7.5 WITH ORTHOPHOSPHORIC ACID). PROTEIN WAS ...詳細: PROTEIN WAS CRYSTALLISED IN 0.88M AMMONIUM SULPHATE, 100MM DI-POTASSIUM HYDROGEN PHOSPHATE AND 100MM DI-SODIUM HYDROGEN PHOSPHATE (TITRATED TO PH 7.5 WITH ORTHOPHOSPHORIC ACID). PROTEIN WAS SOAKED WITH 0.5MM PI-103 IN MOTHER LIQUOR.
解像度: 3.5→61.74 Å / Cor.coef. Fo:Fc: 0.925 / Cor.coef. Fo:Fc free: 0.875 / SU B: 76.068 / SU ML: 0.536 / TLS residual ADP flag: LIKELY RESIDUAL / 交差検証法: THROUGHOUT / ESU R Free: 0.626 / 立体化学のターゲット値: MAXIMUM LIKELIHOOD / 詳細: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
Rfactor
反射数
%反射
Selection details
Rfree
0.296
1340
5 %
RANDOM
Rwork
0.235
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obs
0.238
25729
99.5 %
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溶媒の処理
イオンプローブ半径: 0.8 Å / 減衰半径: 0.8 Å / VDWプローブ半径: 1.4 Å / 溶媒モデル: MASK