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- PDB-2wjx: Crystal structure of the human ionotropic glutamate receptor GluR... -
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Open data
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Basic information
Entry | Database: PDB / ID: 2wjx | ||||||
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Title | Crystal structure of the human ionotropic glutamate receptor GluR2 ATD region at 4.1 A resolution | ||||||
![]() | GLUTAMATE RECEPTOR 2 | ||||||
![]() | TRANSPORT PROTEIN / POSTSYNAPTIC CELL MEMBRANE / GLUR2 / SYNAPSE / MEMBRANE / RECEPTOR / PALMITATE / SYNAPTIC PLASTICITY / ALTERNATIVE SPLICING / ION TRANSPORT / CELL JUNCTION / CELL MEMBRANE / TRANSMEMBRANE / PHOSPHOPROTEIN / GLUTAMATE RECEPTORS / POLYMORPHISM / GLYCOPROTEIN / IONIC CHANNEL / TRANSPORT / ION CHANNEL / RNA EDITING / LIPOPROTEIN | ||||||
Function / homology | ![]() Activation of AMPA receptors / postsynaptic endocytic zone / Trafficking of GluR2-containing AMPA receptors / AMPA glutamate receptor activity / Unblocking of NMDA receptors, glutamate binding and activation / AMPA glutamate receptor complex / Long-term potentiation / excitatory synapse / asymmetric synapse / glutamate-gated receptor activity ...Activation of AMPA receptors / postsynaptic endocytic zone / Trafficking of GluR2-containing AMPA receptors / AMPA glutamate receptor activity / Unblocking of NMDA receptors, glutamate binding and activation / AMPA glutamate receptor complex / Long-term potentiation / excitatory synapse / asymmetric synapse / glutamate-gated receptor activity / MECP2 regulates neuronal receptors and channels / ionotropic glutamate receptor signaling pathway / synaptic transmission, glutamatergic / transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential / postsynaptic density membrane / modulation of chemical synaptic transmission / endocytic vesicle membrane / amyloid-beta binding / postsynapse / chemical synaptic transmission / dendritic spine / postsynaptic density / external side of plasma membrane / neuronal cell body / dendrite / endoplasmic reticulum membrane / signal transduction / plasma membrane Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Clayton, A. / Siebold, C. / Gilbert, R.J.C. / Sutton, G.C. / Harlos, K. / McIlhinney, R.A.J. / Jones, E.Y. / Aricescu, A.R. | ||||||
![]() | ![]() Title: Crystal Structure of the Glur2 Amino-Terminal Domain Provides Insights Into the Architecture and Assembly of Ionotropic Glutamate Receptors. Authors: Clayton, A. / Siebold, C. / Gilbert, R.J.C. / Sutton, G.C. / Harlos, K. / Mcilhinney, R.A.J. / Jones, E.Y. / Aricescu, A.R. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 453 KB | Display | ![]() |
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PDB format | ![]() | 393.1 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 426.3 KB | Display | ![]() |
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Full document | ![]() | 454.4 KB | Display | |
Data in XML | ![]() | 26.9 KB | Display | |
Data in CIF | ![]() | 38.9 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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2 | ![]()
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
NCS ensembles :
NCS oper:
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Components
#1: Protein | Mass: 43775.328 Da / Num. of mol.: 3 / Fragment: AMINO-TERMINAL DOMAIN, RESIDUES 25-412 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.58 Å3/Da / Density % sol: 66 % / Description: NONE |
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Crystal grow | Details: 0.2M BIS-TRIS PROPANE, PH 7.5 0.2M POTASSIUM/SODIUM TARTRATE 20% (W/V) PEG3350 |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC CCD / Detector: CCD / Date: Oct 4, 2008 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9762 Å / Relative weight: 1 |
Reflection | Resolution: 4.1→50 Å / Num. obs: 15949 / % possible obs: 99.6 % / Observed criterion σ(I): 0 / Redundancy: 28.5 % / Biso Wilson estimate: 149.1 Å2 / Rmerge(I) obs: 0.12 / Net I/σ(I): 23.3 |
Reflection shell | Resolution: 4.1→4.2 Å / Redundancy: 29.2 % / Rmerge(I) obs: 0.84 / Mean I/σ(I) obs: 5.7 / % possible all: 100 |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL / Bsol: 99 Å2 / ksol: 0.311 e/Å3 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters |
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Refinement step | Cycle: LAST / Resolution: 4.1→48.379 Å
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Refine LS restraints |
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Refine LS restraints NCS |
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LS refinement shell |
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Refinement TLS params. | Method: refined / Refine-ID: X-RAY DIFFRACTION
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Refinement TLS group |
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