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Yorodumi- PDB-2we9: Crystal structure of Rv0371c from Mycobacterium tuberculosis H37Rv -
+Open data
-Basic information
Entry | Database: PDB / ID: 2we9 | ||||||
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Title | Crystal structure of Rv0371c from Mycobacterium tuberculosis H37Rv | ||||||
Components | MOBA-RELATED PROTEIN | ||||||
Keywords | UNKNOWN FUNCTION / MYCOBACTERIUM TUBERCULOSIS H37RV | ||||||
Function / homology | Function and homology information | ||||||
Biological species | MYCOBACTERIUM TUBERCULOSIS H37RV (bacteria) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / SAD / Resolution: 2.1 Å | ||||||
Authors | Cho, H.J. / Kang, B.S. | ||||||
Citation | Journal: To be Published Title: Crystal Structure of Rv0371C from Mycobacterium Tuberculosis H37Rv Authors: Cho, H.J. / Kang, B.S. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2we9.cif.gz | 82 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2we9.ent.gz | 67.9 KB | Display | PDB format |
PDBx/mmJSON format | 2we9.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 2we9_validation.pdf.gz | 444.8 KB | Display | wwPDB validaton report |
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Full document | 2we9_full_validation.pdf.gz | 448.1 KB | Display | |
Data in XML | 2we9_validation.xml.gz | 17 KB | Display | |
Data in CIF | 2we9_validation.cif.gz | 23.6 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/we/2we9 ftp://data.pdbj.org/pub/pdb/validation_reports/we/2we9 | HTTPS FTP |
-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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2 |
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Unit cell |
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-Components
#1: Protein | Mass: 21329.916 Da / Num. of mol.: 2 / Source method: isolated from a natural source Source: (natural) MYCOBACTERIUM TUBERCULOSIS H37RV (bacteria) References: UniProt: O53706 #2: Chemical | ChemComp-GOL / | #3: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 2.12 Å3/Da / Density % sol: 42 % / Description: NONE |
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Crystal grow | pH: 7.5 / Details: 0.1 M MES PH 6.0 AND 18% PEG 4000 BY MICRO-SEEDING |
-Data collection
Diffraction | Mean temperature: 294 K |
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Diffraction source | Source: SYNCHROTRON / Site: PAL/PLS / Beamline: 4A / Wavelength: 0.97948 |
Detector | Type: ADSC CCD / Detector: CCD / Date: Dec 12, 2007 / Details: MIRRORS |
Radiation | Protocol: MAD / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.97948 Å / Relative weight: 1 |
Reflection | Resolution: 2.1→50 Å / Num. obs: 20560 / % possible obs: 95.4 % / Observed criterion σ(I): 2.1 / Redundancy: 11.9 % / Rmerge(I) obs: 0.07 / Net I/σ(I): 41.96 |
Reflection shell | Resolution: 2.1→2.18 Å / Redundancy: 5.6 % / Rmerge(I) obs: 0.25 / Mean I/σ(I) obs: 5 / % possible all: 73.6 |
-Processing
Software |
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Refinement | Method to determine structure: SAD Starting model: NONE Resolution: 2.1→31.67 Å / Cor.coef. Fo:Fc: 0.943 / Cor.coef. Fo:Fc free: 0.897 / SU B: 15.396 / SU ML: 0.203 / TLS residual ADP flag: LIKELY RESIDUAL / Cross valid method: THROUGHOUT / ESU R: 0.321 / ESU R Free: 0.249 / Stereochemistry target values: MAXIMUM LIKELIHOOD / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 19.02 Å2
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Refinement step | Cycle: LAST / Resolution: 2.1→31.67 Å
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Refine LS restraints |
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