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- PDB-2wa7: Structure of the M202V mutant of human filamin b actin binding do... -
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Open data
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Basic information
Entry | Database: PDB / ID: 2wa7 | ||||||
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Title | Structure of the M202V mutant of human filamin b actin binding domain at 1.85 Angstrom resolution | ||||||
![]() | FILAMIN-B | ||||||
![]() | STRUCTURAL PROTEIN / DISEASE MUTATION / SKELETAL DYSPLASIA / ACTIN-CROSSLINKING / MYOGENESIS / CYTOSKELETON / ACTIN-BINDING / CALPONIN HOMOLOGY DOMAIN / PHOSPHOPROTEIN / DIFFERENTIATION / ATELOSTEOGENESIS / MUTANT / FILAMIN / DWARFISM / CH DOMAIN / DEVELOPMENTAL PROTEIN | ||||||
Function / homology | ![]() epithelial cell morphogenesis / keratinocyte development / brush border / stress fiber / skeletal muscle tissue development / phagocytic vesicle / ISG15 antiviral mechanism / Z disc / cellular response to type II interferon / actin filament binding ...epithelial cell morphogenesis / keratinocyte development / brush border / stress fiber / skeletal muscle tissue development / phagocytic vesicle / ISG15 antiviral mechanism / Z disc / cellular response to type II interferon / actin filament binding / actin cytoskeleton / actin binding / cell cortex / actin cytoskeleton organization / cadherin binding / focal adhesion / signal transduction / RNA binding / extracellular exosome / identical protein binding / membrane / plasma membrane / cytoplasm / cytosol Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Sawyer, G.M. / Clark, A.R. / Robertson, S.P. / Sutherland-Smith, A.J. | ||||||
![]() | ![]() Title: Disease-Associated Substitutions in the Filamin B Actin Binding Domain Confer Enhanced Actin Binding Affinity in the Absence of Major Structural Disturbance: Insights from the Crystal ...Title: Disease-Associated Substitutions in the Filamin B Actin Binding Domain Confer Enhanced Actin Binding Affinity in the Absence of Major Structural Disturbance: Insights from the Crystal Structures of Filamin B Actin Binding Domains. Authors: Sawyer, G.M. / Clark, A.R. / Robertson, S.P. / Sutherland-Smith, A.J. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 66.2 KB | Display | ![]() |
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PDB format | ![]() | 47.3 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
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-Validation report
Summary document | ![]() | 422.1 KB | Display | ![]() |
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Full document | ![]() | 421.8 KB | Display | |
Data in XML | ![]() | 6.6 KB | Display | |
Data in CIF | ![]() | 9.9 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 2wa5SC ![]() 2wa6C S: Starting model for refinement C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 28103.121 Da / Num. of mol.: 1 / Fragment: ACTIN-BINDING DOMAIN, RESIDUES 2-242 / Mutation: YES Source method: isolated from a genetically manipulated source Details: ARSENIC SULFUR LINK AT CYS 178 / Source: (gene. exp.) ![]() ![]() ![]() | ||||||||
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#2: Chemical | ChemComp-CAC / | ||||||||
#3: Chemical | #4: Water | ChemComp-HOH / | Compound details | ENGINEERED | Nonpolymer details | CACODYLATE | Sequence details | THE SEQUENCE IS DESCRIBED IN KRAKOW ET AL. (2004) NAT GENET, 36 (4) PGS 405-410. CLEAVAGE WITH RTEV ...THE SEQUENCE IS DESCRIBED IN KRAKOW ET AL. (2004) NAT GENET, 36 (4) PGS 405-410. CLEAVAGE WITH RTEV PROTEASE LEAVES THE LEADER GLY ALA MET ALA STARTING AT -2. CLONING INTO NCOI CREATED MET ALA INSTEAD OF MET AT POSITION 1. | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.5 Å3/Da / Density % sol: 45 % / Description: NONE |
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Crystal grow | pH: 6.5 Details: PROTEIN WAS CRYSTALLIZED FROM 20% PEG 8000, 0.2 M MAGNESIUM ACETATE AND 0.1 M SODIUM CACODYLATE PH 6.5. |
-Data collection
Diffraction | Mean temperature: 277 K |
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Diffraction source | Source: ![]() |
Detector | Type: RIGAKU RAXIS IV / Detector: IMAGE PLATE / Date: Mar 22, 2007 / Details: OSMIC BLUE CONFOCAL MIRRORS |
Radiation | Monochromator: OSMIC MIRRORS / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Resolution: 1.85→27.83 Å / Num. obs: 23537 / % possible obs: 95.5 % / Observed criterion σ(I): 2.2 / Redundancy: 4.7 % / Rmerge(I) obs: 0.04 / Net I/σ(I): 25.8 |
Reflection shell | Resolution: 1.85→1.95 Å / Redundancy: 4.1 % / Rmerge(I) obs: 0.52 / Mean I/σ(I) obs: 2.2 / % possible all: 79.5 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: PDB ENTRY 2WA5 Resolution: 1.85→27.83 Å / Cor.coef. Fo:Fc: 0.959 / Cor.coef. Fo:Fc free: 0.94 / SU B: 6.102 / SU ML: 0.098 / TLS residual ADP flag: LIKELY RESIDUAL / Cross valid method: THROUGHOUT / ESU R: 0.141 / ESU R Free: 0.136 / Stereochemistry target values: MAXIMUM LIKELIHOOD Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. RESIDUES -2-11, 133-136, 241-242 ARE DISORDERED. RESIDUES GLY ALA MET ALA PRO VAL THR GLU LYS ASP LEU ALA GLU ASP (-2- 11), ASP ASP ASP ALA ...Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. RESIDUES -2-11, 133-136, 241-242 ARE DISORDERED. RESIDUES GLY ALA MET ALA PRO VAL THR GLU LYS ASP LEU ALA GLU ASP (-2- 11), ASP ASP ASP ALA (133-136), AND LYS LEU ( 241-242) WERE EXCLUDED DUE TO INSUFFICIENT ELECTRON DENSITY.
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 37.187 Å2
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Refinement step | Cycle: LAST / Resolution: 1.85→27.83 Å
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Refine LS restraints |
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