Entry | Database: PDB / ID: 2vs1 |
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Title | The crystal structure of Pyrococcus abyssi tRNA (uracil-54, C5)- methyltransferase in complex with S-adenosyl-L-homocysteine |
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Components | UNCHARACTERIZED RNA METHYLTRANSFERASE PYRAB10780 |
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Keywords | TRANSFERASE / METAL-BINDING / METHYLTRANSFERASE / TRNA METHYLTRANSFERASE / S-ADENOSYL-L-METHIONINE / IRON / IRON-SULFUR |
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Function / homology | Function and homology information
rRNA (uridine-C5-)-methyltransferase activity / tRNA (uracil(54)-C5)-methyltransferase activity, S-adenosyl methionine-dependent / tRNA (uracil54-C5)-methyltransferase / tRNA methylation / rRNA base methylation / 4 iron, 4 sulfur cluster binding / metal ion bindingSimilarity search - Function : / tRNA (uracil(54)-C(5))-methyltransferase, TRAM domain / OB fold (Dihydrolipoamide Acetyltransferase, E2P) - #1070 / RNA methyltransferase TrmA, active site / RNA methyltransferase TrmA, conserved site / RNA methyltransferase trmA family signature 1. / RNA methyltransferase trmA family signature 2. / (Uracil-5)-methyltransferase family / tRNA (Uracil-5-)-methyltransferase / SAM-dependent methyltransferase RNA m(5)U-type domain profile. ...: / tRNA (uracil(54)-C(5))-methyltransferase, TRAM domain / OB fold (Dihydrolipoamide Acetyltransferase, E2P) - #1070 / RNA methyltransferase TrmA, active site / RNA methyltransferase TrmA, conserved site / RNA methyltransferase trmA family signature 1. / RNA methyltransferase trmA family signature 2. / (Uracil-5)-methyltransferase family / tRNA (Uracil-5-)-methyltransferase / SAM-dependent methyltransferase RNA m(5)U-type domain profile. / Nucleic acid-binding proteins / Vaccinia Virus protein VP39 / OB fold (Dihydrolipoamide Acetyltransferase, E2P) / S-adenosyl-L-methionine-dependent methyltransferase superfamily / Nucleic acid-binding, OB-fold / Beta Barrel / Rossmann fold / 3-Layer(aba) Sandwich / Mainly Beta / Alpha BetaSimilarity search - Domain/homology |
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Biological species | PYROCOCCUS ABYSSI (archaea) |
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Method | X-RAY DIFFRACTION / SYNCHROTRON / MAD / Resolution: 2.1 Å |
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Authors | Walbott, H. / Leulliot, N. / Grosjean, H. / Golinelli-Pimpaneau, B. |
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Citation | Journal: Nucleic Acids Res. / Year: 2008 Title: The Crystal Structure of Pyrococcus Abyssi tRNA (Uracil-54, C5)-Methyltransferase Provides Insights Into its tRNA Specificity. Authors: Walbott, H. / Leulliot, N. / Grosjean, H. / Golinelli-Pimpaneau, B. |
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History | Deposition | Apr 17, 2008 | Deposition site: PDBE / Processing site: PDBE |
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Revision 1.0 | Aug 5, 2008 | Provider: repository / Type: Initial release |
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Revision 1.1 | May 8, 2011 | Group: Version format compliance |
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Revision 1.2 | Jul 13, 2011 | Group: Version format compliance |
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Revision 1.3 | Jul 12, 2017 | Group: Derived calculations / Category: struct_conn / Item: _struct_conn.pdbx_leaving_atom_flag |
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