Entry Database : PDB / ID : 2vr0 Structure visualization Downloads & linksTitle Crystal structure of cytochrome c nitrite reductase NrfHA complex bound to the HQNO inhibitor ComponentsCYTOCHROME C NITRITE REDUCTASE, CATALYTIC SUBUNIT NFRA NAPC/NIRT CYTOCHROME C FAMILY PROTEIN DetailsKeywords OXIDOREDUCTASE / QUINOL DEHYDROGENASE / HQNO / NRFH / NRFHA / MEMBRANE COMPLEXFunction / homology Function and homology informationFunction Domain/homology Component
nitrite reductase (cytochrome; ammonia-forming) / nitrite reductase (cytochrome, ammonia-forming) activity / anaerobic electron transport chain / denitrification pathway / anaerobic respiration / outer membrane-bounded periplasmic space / electron transfer activity / heme binding / metal ion binding / plasma membrane Similarity search - Function Multiheme cytochrome fold / Di-heme elbow motif domain / NapC/NirT cytochrome c, N-terminal / Denitrification system component NapC/NirT/NrfH / NapC/NirT cytochrome c superfamily / NapC/NirT cytochrome c family, N-terminal region / Cytochrome c7 and related cytochrome c / Cytochrome c552 / Cytochrome c552 / Flavocytochrome C3; Chain A ... Multiheme cytochrome fold / Di-heme elbow motif domain / NapC/NirT cytochrome c, N-terminal / Denitrification system component NapC/NirT/NrfH / NapC/NirT cytochrome c superfamily / NapC/NirT cytochrome c family, N-terminal region / Cytochrome c7 and related cytochrome c / Cytochrome c552 / Cytochrome c552 / Flavocytochrome C3; Chain A / Flavocytochrome C3; Chain A, domain 2 / Multiheme cytochrome c family profile. / Butyryl-CoA Dehydrogenase, subunit A, domain 3 / Multiheme cytochrome superfamily / Butyryl-CoA Dehydrogenase, subunit A; domain 3 / Up-down Bundle / Orthogonal Bundle / Mainly Alpha Similarity search - Domain/homology HEME C / 2-HEPTYL-4-HYDROXY QUINOLINE N-OXIDE / Cytochrome c nitrite reductase subunit NrfA / Cytochrome c nitrite reductase subunit NrfH Similarity search - ComponentBiological species DESULFOVIBRIO VULGARIS (bacteria)Method X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution : 2.8 Å DetailsAuthors Rodrigues, M.L. / Archer, M. CitationJournal : J.Mol.Biol. / Year : 2008Title : Quinol Oxidation by C-Type Cytochromes: Structural Characterization of the Menaquinol Binding Site of Nrfha.Authors : Rodrigues, M.L. / Scott, K.A. / Sansom, M.S.P. / Pereira, I.A.C. / Archer, M. History Deposition Mar 24, 2008 Deposition site : PDBE / Processing site : PDBERevision 1.0 Jun 3, 2008 Provider : repository / Type : Initial releaseRevision 1.1 Jul 13, 2011 Group : Advisory / Version format complianceRevision 1.2 Jun 27, 2018 Group : Advisory / Data collection / Derived calculationsCategory : pdbx_struct_conn_angle / pdbx_validate_close_contact ... pdbx_struct_conn_angle / pdbx_validate_close_contact / struct_conn / struct_conn_type Item : _struct_conn_type.idRevision 1.3 Mar 6, 2019 Group : Data collection / Experimental preparationCategory : database_PDB_rev / database_PDB_rev_record / exptl_crystal_growItem : _exptl_crystal_grow.method / _exptl_crystal_grow.tempRevision 2.0 Sep 25, 2019 Group : Advisory / Atomic model ... Advisory / Atomic model / Data collection / Derived calculations / Non-polymer description / Other / Structure summary Category : atom_site / chem_comp ... atom_site / chem_comp / entity / pdbx_database_status / pdbx_entity_nonpoly / pdbx_nonpoly_scheme / pdbx_struct_conn_angle / pdbx_validate_close_contact / struct_conn / struct_site_gen Item : _atom_site.B_iso_or_equiv / _atom_site.Cartn_x ... _atom_site.B_iso_or_equiv / _atom_site.Cartn_x / _atom_site.Cartn_y / _atom_site.Cartn_z / _atom_site.auth_atom_id / _atom_site.auth_comp_id / _atom_site.label_atom_id / _atom_site.label_comp_id / _atom_site.type_symbol / _chem_comp.formula / _chem_comp.formula_weight / _chem_comp.id / _chem_comp.name / _chem_comp.pdbx_synonyms / _entity.formula_weight / _entity.pdbx_description / _pdbx_database_status.status_code_sf / _pdbx_entity_nonpoly.comp_id / _pdbx_entity_nonpoly.name / _pdbx_nonpoly_scheme.mon_id / _pdbx_nonpoly_scheme.pdb_mon_id / _pdbx_validate_close_contact.auth_comp_id_2 / _struct_site_gen.auth_comp_id / _struct_site_gen.label_comp_id Revision 2.1 Nov 20, 2019 Group : Derived calculations / Category : pdbx_struct_conn_angle / struct_connRevision 2.2 Dec 13, 2023 Group : Data collection / Database references ... Data collection / Database references / Derived calculations / Refinement description Category : chem_comp_atom / chem_comp_bond ... chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model / struct_conn / struct_conn_type Item : _database_2.pdbx_DOI / _database_2.pdbx_database_accession ... _database_2.pdbx_DOI / _database_2.pdbx_database_accession / _struct_conn.conn_type_id / _struct_conn.id / _struct_conn.pdbx_dist_value / _struct_conn.pdbx_leaving_atom_flag / _struct_conn.ptnr1_auth_asym_id / _struct_conn.ptnr1_auth_comp_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr1_label_atom_id / _struct_conn.ptnr1_label_comp_id / _struct_conn.ptnr1_label_seq_id / _struct_conn.ptnr2_auth_asym_id / _struct_conn.ptnr2_auth_comp_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id / _struct_conn.ptnr2_label_atom_id / _struct_conn.ptnr2_label_comp_id / _struct_conn_type.id
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