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Open data
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Basic information
Entry | Database: PDB / ID: 2v9u | ||||||
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Title | Rim domain of main porin from Mycobacteria smegmatis | ||||||
![]() | MSPA | ||||||
![]() | TRANSPORT PROTEIN / PORI / PORIN / MYCOBACTERIA | ||||||
Function / homology | ![]() porin activity / pore complex / cell outer membrane / iron ion transport / extracellular region Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Grueninger, D. / Ziegler, M.O.P. / Koetter, J.W.A. / Treiber, N. / Schulze, M.-S. / Schulz, G.E. | ||||||
![]() | ![]() Title: Designed Protein-Protein Association. Authors: Grueninger, D. / Treiber, N. / Ziegler, M.O.P. / Koetter, J.W.A. / Schulze, M.-S. / Schulz, G.E. #1: ![]() Title: The Structure of a Mycobacterial Outer-Membrane Channel Authors: Faller, M. / Niederweis, M. / Schulz, G.E. | ||||||
History |
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Remark 700 | SHEET THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN ORDER TO REPRESENT THIS FEATURE IN ... SHEET THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, TWO SHEETS ARE DEFINED. |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 197.2 KB | Display | ![]() |
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PDB format | ![]() | 162 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 488.5 KB | Display | ![]() |
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Full document | ![]() | 521.9 KB | Display | |
Data in XML | ![]() | 38.2 KB | Display | |
Data in CIF | ![]() | 52.6 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 2uyuC ![]() 2uyvC ![]() 2v7gC ![]() 2v9eC ![]() 2v9fC ![]() 2v9gC ![]() 2v9iC ![]() 2v9lC ![]() 2v9mC ![]() 2v9nC ![]() 2v9oC C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 13995.358 Da / Num. of mol.: 8 / Fragment: RIM DOMAIN, RESIDUES 28-96,149-211 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.2 Å3/Da / Density % sol: 61.57 % / Description: NONE |
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-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: MARRESEARCH / Detector: IMAGE PLATE |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.95373 Å / Relative weight: 1 |
Reflection | Resolution: 2.59→65.79 Å / Num. obs: 36299 / % possible obs: 82.6 % / Observed criterion σ(I): 4.1 / Redundancy: 2.17 % / Rmerge(I) obs: 0.06 / Net I/σ(I): 10.18 |
Reflection shell | Resolution: 2.59→2.69 Å / Redundancy: 2.1 % / Rmerge(I) obs: 0.21 / Mean I/σ(I) obs: 4.1 / % possible all: 87.1 |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.4 Å / Solvent model: BABINET MODEL WITH MASK | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 50.43 Å2
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Refinement step | Cycle: LAST / Resolution: 2.59→65.79 Å
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Refine LS restraints |
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