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- PDB-2rps: Solution structure of a novel insect chemokine isolated from inte... -
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Open data
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Basic information
Entry | Database: PDB / ID: 2rps | ||||||
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Title | Solution structure of a novel insect chemokine isolated from integument | ||||||
![]() | Chemokine | ||||||
![]() | IMMUNE SYSTEM | ||||||
Function / homology | Chemokine![]() | ||||||
Biological species | ![]() | ||||||
Method | SOLUTION NMR / DGSA-distance geometry simulated annealing | ||||||
Model type details | minimized average | ||||||
![]() | Kamiya, M. / Nakatogawa, S. / Oda, Y. / Kamijima, T. / Aizawa, T. / Demura, M. / Hayakawa, Y. / Kawano, K. | ||||||
![]() | ![]() Title: A novel peptide mediates aggregation and migration of hemocytes from an insect Authors: Nakatogawa, S. / Oda, Y. / Kamiya, M. / Kamijima, T. / Aizawa, T. / Clark, K.D. / Demura, M. / Kawano, K. / Strand, M.R. / Hayakawa, Y. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 190.3 KB | Display | ![]() |
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PDB format | ![]() | 163.3 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 344.3 KB | Display | ![]() |
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Full document | ![]() | 464.4 KB | Display | |
Data in XML | ![]() | 12 KB | Display | |
Data in CIF | ![]() | 18.5 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: Protein/peptide | Mass: 3545.007 Da / Num. of mol.: 1 / Fragment: UNP residues 21-52 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() Production host: ![]() ![]() |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||
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NMR experiment |
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Sample preparation
Details |
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Sample |
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Sample conditions | Ionic strength: 0 / pH: 5.1 / Pressure: ambient / Temperature: 303 K |
-NMR measurement
NMR spectrometer |
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Processing
NMR software |
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Refinement | Method: DGSA-distance geometry simulated annealing / Software ordinal: 1 | ||||||||||||||||||||||||
NMR representative | Selection criteria: minimized average structure | ||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 100 / Conformers submitted total number: 20 / Representative conformer: 1 |