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- PDB-2rlu: The Three Dimensional Structure of the Moorella thermoacetica Sel... -
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Basic information
Entry | Database: PDB / ID: 2rlu | ||||||||||||||||||||
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Title | The Three Dimensional Structure of the Moorella thermoacetica Selenocysteine Insertion Sequence RNA Hairpin and its Interaction with the Elongation factor SelB | ||||||||||||||||||||
![]() | RNA (5'-R(*![]() RNA / RNA structure / Selenocysteine / SelB / protein-RNA interactions | Function / homology | RNA / RNA (> 10) | ![]() Method | SOLUTION NMR / simulated annealing, molecular dynamics | Model details | Three dimensional structure of the Selenocysteine Insertion Sequence from Moorella thermoacetica ...Three dimensional structure of the Selenocysteine Insertion Sequence from Moorella thermoacetica determined by NMR spectroscopy | ![]() Beribisky, A.V. / Tavares, T.J. / Amborski, A.N. / Motamed, M. / Johnson, A.E. / Mark, T.L. / Johnson, P.E. | ![]() ![]() Title: The three-dimensional structure of the Moorella thermoacetica selenocysteine insertion sequence RNA hairpin and its interaction with the elongation factor SelB Authors: Beribisky, A.V. / Tavares, T.J. / Amborski, A.N. / Motamed, M. / Johnson, A.E. / Mark, T.L. / Johnson, P.E. History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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PDBx/mmCIF format | ![]() | 121.2 KB | Display | ![]() |
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PDB format | ![]() | 101 KB | Display | ![]() |
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-Validation report
Summary document | ![]() | 324.2 KB | Display | ![]() |
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Full document | ![]() | 361 KB | Display | |
Data in XML | ![]() | 3.8 KB | Display | |
Data in CIF | ![]() | 6 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: RNA chain | Mass: 6085.648 Da / Num. of mol.: 1 / Source method: obtained synthetically / Details: In-vitro transcription using T7 RNA polymerase. |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR Details: Three dimensional structure of the Selenocysteine Insertion Sequence from Moorella thermoacetica determined by NMR spectroscopy | ||||||||||||||||||||||||||||||||||||||||
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NMR experiment |
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Sample preparation
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Sample conditions |
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-NMR measurement
NMR spectrometer |
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Processing
NMR software |
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Refinement | Method: simulated annealing, molecular dynamics / Software ordinal: 1 | ||||||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the noe lowest energy Conformers calculated total number: 30 / Conformers submitted total number: 10 |