+Open data
-Basic information
Entry | Database: PDB / ID: 2qpn | ||||||
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Title | GES-1 beta-lactamase | ||||||
Components | Beta-lactamase GES-1 | ||||||
Keywords | HYDROLASE / beta-lactamase / apo-enzyme / Plasmid | ||||||
Function / homology | Function and homology information beta-lactam antibiotic catabolic process / beta-lactamase activity / beta-lactamase / response to antibiotic Similarity search - Function | ||||||
Biological species | Klebsiella pneumoniae (bacteria) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 1.1 Å | ||||||
Authors | Smith, C.A. / Caccamo, M. / Kantardjieff, K.A. / Vakulenko, S. | ||||||
Citation | Journal: Acta Crystallogr.,Sect.D / Year: 2007 Title: Structure of GES-1 at atomic resolution: insights into the evolution of carbapenamase activity in the class A extended-spectrum beta-lactamases. Authors: Smith, C.A. / Caccamo, M. / Kantardjieff, K.A. / Vakulenko, S. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2qpn.cif.gz | 242.2 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2qpn.ent.gz | 203.6 KB | Display | PDB format |
PDBx/mmJSON format | 2qpn.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 2qpn_validation.pdf.gz | 447.8 KB | Display | wwPDB validaton report |
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Full document | 2qpn_full_validation.pdf.gz | 457.6 KB | Display | |
Data in XML | 2qpn_validation.xml.gz | 29.8 KB | Display | |
Data in CIF | 2qpn_validation.cif.gz | 46.3 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/qp/2qpn ftp://data.pdbj.org/pub/pdb/validation_reports/qp/2qpn | HTTPS FTP |
-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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2 |
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Unit cell |
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-Components
#1: Protein | Mass: 31192.438 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Klebsiella pneumoniae (bacteria) / Gene: ges-1, blaGES-1 / Production host: Escherichia coli (E. coli) / References: UniProt: Q9KJY7 #2: Chemical | #3: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 1.92 Å3/Da / Density % sol: 36.06 % |
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Crystal grow | Temperature: 295 K / Method: vapor diffusion, sitting drop Details: 10% PEG8000, 10% PEG1000, VAPOR DIFFUSION, SITTING DROP, temperature 295K |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: SYNCHROTRON / Site: SSRL / Beamline: BL11-1 / Wavelength: 0.82653 Å |
Detector | Type: MARMOSAIC 325 mm CCD / Detector: CCD / Date: May 23, 2007 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.82653 Å / Relative weight: 1 |
Reflection | Resolution: 1→20 Å / Num. all: 237028 / Num. obs: 163829 / % possible obs: 93.4 % / Observed criterion σ(F): 4 / Rmerge(I) obs: 0.046 / Net I/σ(I): 11.47 |
Reflection shell | Resolution: 1→1.05 Å / Rmerge(I) obs: 0.349 / Mean I/σ(I) obs: 2.69 / % possible all: 90.1 |
-Processing
Software |
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Refinement | Method to determine structure: MOLECULAR REPLACEMENT / Resolution: 1.1→10 Å / Cross valid method: THROUGHOUT / σ(F): 0 / Details: anisotropic displacement parameter refinement
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Displacement parameters | Biso mean: 18 Å2 | |||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.1→10 Å
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Refine LS restraints |
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