SEQUENCE THE L-AMINO VERSION OF THE PROTEINS IN CHAINS A AND B CORRESPOND TO THE SEQUENCES IN UNP ...SEQUENCE THE L-AMINO VERSION OF THE PROTEINS IN CHAINS A AND B CORRESPOND TO THE SEQUENCES IN UNP ENTRIES MONA_DIOCU AND MONB_DIOCU RESPECTIVELY
Mass: 5098.772 Da / Num. of mol.: 1 / Source method: obtained synthetically Details: The enantiomeric protein was chemically synthesized with all D-amino acids. The sequence of the protein is naturally found in Dioscoreophyllum cumminsii.
#2: Protein/peptide
D-MONELLINCHAINB / MONELLIN CHAIN II
Mass: 5593.396 Da / Num. of mol.: 1 / Source method: obtained synthetically Details: The enantiomeric protein was chemically synthesized with all D-amino acids. The sequence of the protein is naturally found in Dioscoreophyllum cumminsii.
Monochromator: SI 111 / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelength
Wavelength: 1.08 Å / Relative weight: 1
Reflection
Resolution: 1.8→35 Å / Num. obs: 9511 / % possible obs: 90 % / Observed criterion σ(I): 3 / Redundancy: 3.5 % / Biso Wilson estimate: 13.6 Å2 / Rmerge(I) obs: 0.042 / Net I/σ(I): 11
Reflection shell
Resolution: 1.8→1.84 Å / % possible all: 70
Reflection
*PLUS
Highest resolution: 1.8 Å / Lowest resolution: 30 Å / Num. obs: 17490 / Rmerge(I) obs: 0.045
-
Processing
Software
Name
Version
Classification
AMoRE
phasing
X-PLOR
3.1
refinement
MAR345
datacollection
SCALEPACK
datascaling
Refinement
Method to determine structure: MOLECULAR REPLACEMENT / Resolution: 1.8→6 Å / Rfactor Rfree error: 0.007 / Data cutoff high absF: 735264.36 / Data cutoff low absF: 0 / Isotropic thermal model: RESTRAINED / Cross valid method: THROUGHOUT / σ(F): 0 Details: THE PROTEIN WAS CHEMICALLY SYNTHESIZED WITH ALL D-AMINO ACIDS. THIS STRUCTURE WAS DETERMINED AND REFINED WITH L-AMINO ACID PARAMETERS. THE ACTUAL ASYMMETRIC UNIT SHOULD CONTAIN THE PROTEIN ...Details: THE PROTEIN WAS CHEMICALLY SYNTHESIZED WITH ALL D-AMINO ACIDS. THIS STRUCTURE WAS DETERMINED AND REFINED WITH L-AMINO ACID PARAMETERS. THE ACTUAL ASYMMETRIC UNIT SHOULD CONTAIN THE PROTEIN REPRESENTED BY THIS COORDINATE FILE.
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.215
919
10.6 %
RANDOM
Rwork
0.175
-
-
-
obs
0.175
8665
87.7 %
-
Displacement parameters
Biso mean: 28.2 Å2
Baniso -1
Baniso -2
Baniso -3
1-
-0.67 Å2
0 Å2
0.89 Å2
2-
-
0.21 Å2
0 Å2
3-
-
-
0.46 Å2
Refine analyze
Free
Obs
Luzzati coordinate error
0.23 Å
0.19 Å
Luzzati d res low
-
5 Å
Luzzati sigma a
0.22 Å
0.19 Å
Refinement step
Cycle: LAST / Resolution: 1.8→6 Å
Protein
Nucleic acid
Ligand
Solvent
Total
Num. atoms
754
0
0
82
836
Refine LS restraints
Refine-ID
Type
Dev ideal
Dev ideal target
X-RAY DIFFRACTION
x_bond_d
0.009
X-RAY DIFFRACTION
x_bond_d_na
X-RAY DIFFRACTION
x_bond_d_prot
X-RAY DIFFRACTION
x_angle_d
X-RAY DIFFRACTION
x_angle_d_na
X-RAY DIFFRACTION
x_angle_d_prot
X-RAY DIFFRACTION
x_angle_deg
1.5
X-RAY DIFFRACTION
x_angle_deg_na
X-RAY DIFFRACTION
x_angle_deg_prot
X-RAY DIFFRACTION
x_dihedral_angle_d
25.6
X-RAY DIFFRACTION
x_dihedral_angle_d_na
X-RAY DIFFRACTION
x_dihedral_angle_d_prot
X-RAY DIFFRACTION
x_improper_angle_d
1.3
X-RAY DIFFRACTION
x_improper_angle_d_na
X-RAY DIFFRACTION
x_improper_angle_d_prot
X-RAY DIFFRACTION
x_mcbond_it
1.99
1.5
X-RAY DIFFRACTION
x_mcangle_it
3.27
2
X-RAY DIFFRACTION
x_scbond_it
3.48
2
X-RAY DIFFRACTION
x_scangle_it
5.29
2.5
LS refinement shell
Resolution: 1.8→1.91 Å / Rfactor Rfree error: 0.03 / Total num. of bins used: 6
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