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- PDB-2prd: CRYSTAL STRUCTURE OF INORGANIC PYROPHOSPHATASE FROM THERMUS THERM... -
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Open data
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Basic information
Entry | Database: PDB / ID: 2prd | ||||||
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Title | CRYSTAL STRUCTURE OF INORGANIC PYROPHOSPHATASE FROM THERMUS THERMOPHILUS | ||||||
![]() | PYROPHOSPHATE PHOSPHOHYDROLASE | ||||||
![]() | HYDROLASE | ||||||
Function / homology | ![]() inorganic diphosphatase / inorganic diphosphate phosphatase activity / phosphate-containing compound metabolic process / magnesium ion binding / cytoplasm Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() | ||||||
![]() | Teplyakov, A. | ||||||
![]() | ![]() Title: Crystal structure of inorganic pyrophosphatase from Thermus thermophilus. Authors: Teplyakov, A. / Obmolova, G. / Wilson, K.S. / Ishii, K. / Kaji, H. / Samejima, T. / Kuranova, I. #1: ![]() Title: Purification, Crystallization and Preliminary X-Ray Analysis of Inorganic Pyrophosphatase from Thermus Thermophilus Authors: Obmolova, G. / Kuranova, I. / Teplyakov, A. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 47.3 KB | Display | ![]() |
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PDB format | ![]() | 34 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 424.6 KB | Display | ![]() |
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Full document | ![]() | 427.7 KB | Display | |
Data in XML | ![]() | 9.8 KB | Display | |
Data in CIF | ![]() | 12.9 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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Unit cell |
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Atom site foot note | 1: CIS PROLINE - PRO 13 | |||||||||
Components on special symmetry positions |
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Components
#1: Protein | Mass: 19109.836 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) ![]() ![]() |
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#2: Chemical | ChemComp-SO4 / |
#3: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.51 Å3/Da / Density % sol: 51 % | ||||||||||||||||||||||||||||||||||||
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Crystal grow | *PLUS pH: 7.5 / Method: vapor diffusion | ||||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Reflection | Num. obs: 11673 / % possible obs: 89.1 % / Observed criterion σ(I): 0 |
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Reflection | *PLUS Highest resolution: 2 Å / % possible obs: 90 % |
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Processing
Software | Name: PROLSQ / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Refinement | Resolution: 2→10 Å / σ(F): 0 /
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Displacement parameters | Biso mean: 20 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2→10 Å
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Refine LS restraints |
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