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- PDB-2pgk: THE USE OF PHASE COMBINATION IN THE REFINEMENT OF PHOSPHOGLYCERAT... -

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Entry
Database: PDB / ID: 2pgk
TitleTHE USE OF PHASE COMBINATION IN THE REFINEMENT OF PHOSPHOGLYCERATE KINASE AT 2.5 ANGSTROMS RESOLUTION
ComponentsPHOSPHOGLYCERATE KINASE
KeywordsPHOSPHOTRANSFERASE (CARBOXYL ACCEPTOR)
Biological speciesEquus caballus (horse)
MethodX-RAY DIFFRACTION / Resolution: 3 Å
AuthorsBanks, R.D. / Blake, C.C.F. / Evans, P.R. / Maser, R.M.
Citation
Journal: Acta Crystallogr.,Sect.A / Year: 1981
Title: The Use of Phase Combination in the Refinement of Phosphoglycerate Kinase at 2.5 Angstroms Resolution
Authors: Rice, D.W.
#1: Journal: Philos.Trans.R.Soc.London,Ser.B / Year: 1981
Title: Phosphoglycerate Kinase
Authors: Blake, C.C.F. / Rice, D.W.
#2: Journal: J.Mol.Biol. / Year: 1974
Title: Structure of Horse Muscle Phosphoglycerate Kinase, Some Results on the Chain Conformation,Substrate Binding and Evolution of the Molecule from a 3 Angstroms Fourier Map
Authors: Blake, C.C.F. / Evans, P.R.
#3: Journal: Nature New Biol. / Year: 1972
Title: Structure of Horse-Muscle Phosphoglycerate Kinase at 6 Angstroms Resolution
Authors: Blake, C.C.F. / Evans, P.R. / Scopes, R.K.
#4: Journal: Essays in Biochem. / Year: 1975
Title: X-Ray Studies of Glycolytic Enzymes
Authors: Blake, C.C.F.
#5: Journal: Atlas of Macromolecular Structure on Microfiche / Year: 1976
History
DepositionAug 28, 1976Processing site: BNL
Revision 1.0Sep 1, 1976Provider: repository / Type: Initial release
Revision 1.1Mar 21, 2008Group: Version format compliance
Revision 1.2Jul 13, 2011Group: Version format compliance
Revision 1.3Feb 21, 2024Group: Database references / Other / Category: database_2 / pdbx_database_status
Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_database_status.process_site

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Assembly

Deposited unit
A: PHOSPHOGLYCERATE KINASE


Theoretical massNumber of molelcules
Total (without water)34,7411
Polymers34,7411
Non-polymers00
Water00
1


  • Idetical with deposited unit
  • defined by author
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Unit cell
Length a, b, c (Å)50.800, 106.900, 36.300
Angle α, β, γ (deg.)90.00, 98.60, 90.00
Int Tables number4
Space group name H-MP1211

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Components

#1: Protein PHOSPHOGLYCERATE KINASE


Mass: 34740.750 Da / Num. of mol.: 1
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Equus caballus (horse) / Tissue: MUSCLE / References: phosphoglycerate kinase

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Experimental details

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Experiment

ExperimentMethod: X-RAY DIFFRACTION

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Sample preparation

CrystalDensity Matthews: 2.81 Å3/Da / Density % sol: 56.15 %
Crystal grow
*PLUS
Method: other / Details: Leijonmarck, M., (1980) Nature, 286, 824.

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Processing

RefinementHighest resolution: 3 Å
Refinement stepCycle: LAST / Highest resolution: 3 Å
ProteinNucleic acidLigandSolventTotal
Num. atoms1632 0 0 0 1632

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