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Yorodumi- PDB-2pcy: THE CRYSTAL STRUCTURE OF POPLAR APOPLASTOCYANIN AT 1.8-ANGSTROMS ... -
+Open data
-Basic information
Entry | Database: PDB / ID: 2pcy | ||||||
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Title | THE CRYSTAL STRUCTURE OF POPLAR APOPLASTOCYANIN AT 1.8-ANGSTROMS RESOLUTION. THE GEOMETRY OF THE COPPER-BINDING SITE IS CREATED BY THE POLYPEPTIDE | ||||||
Components | PLASTOCYANIN | ||||||
Keywords | ELECTRON TRANSPORT PROTEIN(CUPROPROTEIN) | ||||||
Function / homology | Function and homology information chloroplast thylakoid membrane / electron transfer activity / copper ion binding Similarity search - Function | ||||||
Biological species | Populus nigra (black poplar) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 1.8 Å | ||||||
Authors | Garrett, T.P.J. / Guss, J.M. / Freeman, H.C. | ||||||
Citation | Journal: J.Biol.Chem. / Year: 1984 Title: The crystal structure of poplar apoplastocyanin at 1.8-A resolution. The geometry of the copper-binding site is created by the polypeptide Authors: Garrett, T.P. / Clingeleffer, D.J. / Guss, J.M. / Rogers, S.J. / Freeman, H.C. #1: Journal: J.Mol.Biol. / Year: 1983 Title: Structure of Oxidized Poplar Plastocyanin at 1.6 Angstroms Resolution Authors: Guss, J.M. / Freeman, H.C. #2: Journal: Nature / Year: 1978 Title: X-Ray Crystal Structure Analysis of Plastocyanin at 2.7 Angstroms Resolution Authors: Colman, P.M. / Freeman, H.C. / Guss, J.M. / Murata, M. / Norris, V.A. / Ramshaw, J.A.M. / Venkatappa, M.P. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2pcy.cif.gz | 29 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2pcy.ent.gz | 19.5 KB | Display | PDB format |
PDBx/mmJSON format | 2pcy.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/pc/2pcy ftp://data.pdbj.org/pub/pdb/validation_reports/pc/2pcy | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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Atom site foot note | 1: RESIDUES 16 AND 36 ARE CIS-PROLINES. |
-Components
#1: Protein | Mass: 10493.607 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Populus nigra (black poplar) / References: UniProt: P00299 |
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#2: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 1.91 Å3/Da / Density % sol: 35.5 % |
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Crystal grow | *PLUS Method: other / Details: Chapman, G.V., (1977) J. Mol. Biol., 110, 187. |
-Data collection
Reflection | *PLUS Highest resolution: 1.8 Å / Num. all: 7891 / Num. obs: 7103 / Observed criterion σ(I): 1 / Rmerge(I) obs: 0.029 |
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-Processing
Software | Name: RESTRAINED / Version: RECIPROCAL-SPACE LEAST-SQUARES REFINEMENT / Classification: refinement | ||||||||||||
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Refinement | Resolution: 1.8→7 Å / Rfactor Rwork: 0.16 / σ(I): 1 | ||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.8→7 Å
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