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Yorodumi- PDB-2mu9: Changing ABRA protein peptide to fit the HLA-DR B1*0301 molecule ... -
+Open data
-Basic information
Entry | Database: PDB / ID: 2mu9 | ||||||
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Title | Changing ABRA protein peptide to fit the HLA-DR B1*0301 molecule renders it protection-inducing | ||||||
Components | P101/acidic basic repeat antigen | ||||||
Keywords | PEPTIDE BINDING PROTEIN / Acidic-Basic Repeat Antigen (ABRA) | ||||||
Function / homology | symbiont-containing vacuole / cell surface / membrane / 101 kDa malaria antigen / p101/acidic basic repeat antigen Function and homology information | ||||||
Biological species | Plasmodium falciparum (malaria parasite P. falciparum) | ||||||
Method | SOLUTION NMR / DGSA-distance geometry simulated annealing | ||||||
Authors | Salazar, L. / Alba, M. / Curtidor, H. / Bermudez, A. / Vargas, L. / Rivera, Z. / Patarroyo, M. | ||||||
Citation | Journal: Biochem.Biophys.Res.Commun. / Year: 2004 Title: Changing ABRA protein peptide to fit into the HLA-DRbeta1*0301 molecule renders it protection-inducing. Authors: Salazar, L.M. / Alba, M.P. / Curtidor, H. / Bermudez, A. / Vargas, L.E. / Rivera, Z.J. / Patarroyo, M.E. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2mu9.cif.gz | 130 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2mu9.ent.gz | 91.6 KB | Display | PDB format |
PDBx/mmJSON format | 2mu9.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/mu/2mu9 ftp://data.pdbj.org/pub/pdb/validation_reports/mu/2mu9 | HTTPS FTP |
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-Related structure data
Similar structure data | |
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Other databases |
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein/peptide | Mass: 2502.948 Da / Num. of mol.: 1 / Fragment: UNP residues 161-180 / Source method: obtained synthetically Source: (synth.) Plasmodium falciparum (malaria parasite P. falciparum) References: UniProt: Q9NIH1, UniProt: Q8I5D2*PLUS |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||
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NMR experiment |
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-Sample preparation
Details | Contents: 10 mg/mL protein, 30% trifluoroethanol/70% water / Solvent system: 30% trifluoroethanol/70% water |
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Sample | Conc.: 10 mg/mL / Component: entity-1 |
Sample conditions | pH: 3.7 / Pressure: ambient / Temperature: 295 K |
-NMR measurement
NMR spectrometer | Type: Bruker DRX / Manufacturer: Bruker / Model: DRX / Field strength: 600 MHz |
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-Processing
NMR software |
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Refinement | Method: DGSA-distance geometry simulated annealing / Software ordinal: 1 | ||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||
NMR ensemble | Conformer selection criteria: structures with the least restraint violations Conformers calculated total number: 50 / Conformers submitted total number: 21 |