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- PDB-2mib: THE STRUCTURE OF MURINE INTERLEUKIN-1 BETA AT 2.8 ANGSTROMS RESOLUTION -
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Open data
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Basic information
Entry | Database: PDB / ID: 2mib | ||||||
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Title | THE STRUCTURE OF MURINE INTERLEUKIN-1 BETA AT 2.8 ANGSTROMS RESOLUTION | ||||||
![]() | INTERLEUKIN-1 BETA | ||||||
![]() | CYTOKINE | ||||||
Function / homology | ![]() CLEC7A/inflammasome pathway / negative regulation of branching morphogenesis of a nerve / Pyroptosis / positive regulation of glial cell differentiation / Interleukin-1 processing / negative regulation of glutamate secretion / negative regulation of neural precursor cell proliferation / negative regulation of adiponectin secretion / monocyte aggregation / negative regulation of lipid metabolic process ...CLEC7A/inflammasome pathway / negative regulation of branching morphogenesis of a nerve / Pyroptosis / positive regulation of glial cell differentiation / Interleukin-1 processing / negative regulation of glutamate secretion / negative regulation of neural precursor cell proliferation / negative regulation of adiponectin secretion / monocyte aggregation / negative regulation of lipid metabolic process / positive regulation of lipid catabolic process / negative regulation of glucose transmembrane transport / regulation of nitric-oxide synthase activity / hyaluronan biosynthetic process / positive regulation of T-helper 1 cell cytokine production / positive regulation of complement activation / Interleukin-1 signaling / cellular response to interleukin-17 / sequestering of triglyceride / negative regulation of gap junction assembly / positive regulation of prostaglandin secretion / positive regulation of stress-activated MAPK cascade / positive regulation of prostaglandin biosynthetic process / positive regulation of immature T cell proliferation in thymus / vascular endothelial growth factor production / positive regulation of astrocyte differentiation / regulation of defense response to virus by host / fever generation / positive regulation of fever generation / regulation of establishment of endothelial barrier / neutrophil activation / response to carbohydrate / interleukin-1 receptor binding / positive regulation of monocyte chemotactic protein-1 production / positive regulation of neutrophil chemotaxis / positive regulation of heterotypic cell-cell adhesion / negative regulation of synaptic transmission / positive regulation of membrane protein ectodomain proteolysis / positive regulation of granulocyte macrophage colony-stimulating factor production / interleukin-1-mediated signaling pathway / positive regulation of p38MAPK cascade / response to ATP / : / leukocyte migration / macrophage chemotaxis / regulation of insulin secretion / social behavior / positive regulation of cell division / negative regulation of neuron differentiation / regulation of neurogenesis / negative regulation of extrinsic apoptotic signaling pathway in absence of ligand / positive regulation of vascular endothelial growth factor production / ectopic germ cell programmed cell death / negative regulation of lipid catabolic process / positive regulation of epithelial to mesenchymal transition / positive regulation of chemokine production / positive regulation of glial cell proliferation / JNK cascade / extrinsic apoptotic signaling pathway in absence of ligand / positive regulation of interleukin-2 production / negative regulation of insulin receptor signaling pathway / positive regulation of mitotic nuclear division / neutrophil chemotaxis / negative regulation of MAP kinase activity / secretory granule / cytokine activity / positive regulation of interleukin-8 production / astrocyte activation / positive regulation of JNK cascade / memory / cytokine-mediated signaling pathway / negative regulation of neurogenesis / positive regulation of non-canonical NF-kappaB signal transduction / cellular response to mechanical stimulus / positive regulation of angiogenesis / positive regulation of interleukin-6 production / positive regulation of nitric oxide biosynthetic process / positive regulation of type II interferon production / positive regulation of neuron apoptotic process / cellular response to xenobiotic stimulus / integrin binding / positive regulation of cytosolic calcium ion concentration / cellular response to lipopolysaccharide / positive regulation of canonical NF-kappaB signal transduction / vesicle / response to lipopolysaccharide / receptor ligand activity / positive regulation of ERK1 and ERK2 cascade / lysosome / defense response to Gram-positive bacterium / inflammatory response / positive regulation of protein phosphorylation / immune response / positive regulation of apoptotic process / protein domain specific binding / negative regulation of gene expression / positive regulation of gene expression / negative regulation of transcription by RNA polymerase II / positive regulation of transcription by RNA polymerase II / extracellular space Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() | ||||||
![]() | Priestle, J.P. / Van Oostrum, J. / Schmitz, A. / Gruetter, M.G. | ||||||
![]() | ![]() Title: The structure of murine interleukin-1 beta at 2.8 A resolution. Authors: van Oostrum, J. / Priestle, J.P. / Grutter, M.G. / Schmitz, A. | ||||||
History |
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Remark 700 | SHEET THE SHEET PRESENTED AS *S1* ON SHEET RECORDS BELOW IS ACTUALLY A SIX-STRANDED BETA BARREL. ...SHEET THE SHEET PRESENTED AS *S1* ON SHEET RECORDS BELOW IS ACTUALLY A SIX-STRANDED BETA BARREL. THIS IS REPRESENTED BY A SEVEN-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 39 KB | Display | ![]() |
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PDB format | ![]() | 27.3 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
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-Validation report
Summary document | ![]() | 363.9 KB | Display | ![]() |
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Full document | ![]() | 366.3 KB | Display | |
Data in XML | ![]() | 5 KB | Display | |
Data in CIF | ![]() | 7 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | |
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Similar structure data |
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Atom site foot note | 1: CIS PROLINE - PRO 91 |
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Components
#1: Protein | Mass: 17415.877 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() |
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#2: Water | ChemComp-HOH / |
Sequence details | THE SEQUENCE IS ALIGNED TO THE HUMAN INTERLEUKIN-1 BETA SEQUENCE. THIS RESULTS IN THE DELETION OF ...THE SEQUENCE IS ALIGNED TO THE HUMAN INTERLEUKI |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.47 Å3/Da / Density % sol: 64.59 % |
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Processing
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Refinement | Resolution: 2.84→10 Å / Rfactor obs: 0.173 / σ(F): 0 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.84→10 Å
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